Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01423 ATGGGGAAGAAGAAGCATAAGCGACCGGAATCGGAGTCGGAGGCACTTGACGGAGGCGATTTTGAAGCTCGGCATGAAACTGAGCTCATTAATGGATGCTCTTCTGAGACGAAGAAGAAGAAGAAGAAGAGGAAGAAGCAGAATGTTGAGAATGAGGAAATCGAGGGGGAGAAGAGGAAACCGATTTCAAAACCTACAGTGAGCATGGCAGTATCCGGTTCCATCATTGATAACGCTCAATCCCTTGAGCTTGCCACCAGATTGGCTGGTCAAATCGCTCGAGCGGCAACCATATTCCGAATTGACGAGGAAGATAGTTTTTGTATGTATCAGGTGGTGGTATTTGACAGTGGAAGGAGTTCAATGACTGGCTCGGATGTTGCGGCAGCTAACAATTCAGATGAGGATGAAAGTGGCGCTGCTTTTCTTATAAGGATCTTGAAGTATCTTGAGACTCCACAATACTTGAGAAAAGCTCTTTTCCCAAAGCACAACAATTTAAGATTTGTGGGGATGTTGCCCCCGCTTGATGCCCCTCACCATTTGCGCAAGCATGAATGGGGTCCCTATCGAGAAGGTGTTACCTTGAAAGAAAGAGCTCCAGATGCTAGAGGAACATTAGTTGATGTTGGTTTGAGTAAGAACGTGGTAGTTGATGAAATACTTGAACCCGGAAGAAGAGTAACAGTTGCTATGGGAACAGATCGCAATTTACTTGCTGATCTACCCCGCCAGGTTGTCTCATCTTCAAAGCCTGTGGAAGAAGAACTTTACTGGGGTTATAGAGTGCGATATGCTTCTTCTTTGAGTGCAGTTTTTAAGGAGAGTTCATACGAGGGTGGTTATGATCACTTGATTGGAACCTCAGAGCATGGAACAATAATTAAGTCCTCGGAACTAATACTACCTTCTTTCAGACATCTTTTAATTGCCTTTGGTGGACTTGCCGGTTTGGAGGAGAGCATTGAGGAAGATAACAACTTCAAGAGTAAAAATGCTTGTGAGATCTTTTCTTCGTACTTGAATACATGTCCACTGCAAGGAAGCCGAACAATTCGAACAGAGGAAGCAATACTCATCTCTCTCCAGTACTTCCAAGAACCGATAAGCAGGGCATTGCAGATTTCAGCAGATTAG 1137 44.42 MGKKKHKRPESESEALDGGDFEARHETELINGCSSETKKKKKKRKKQNVENEEIEGEKRKPISKPTVSMAVSGSIIDNAQSLELATRLAGQIARAATIFRIDEEDSFCMYQVVVFDSGRSSMTGSDVAAANNSDEDESGAAFLIRILKYLETPQYLRKALFPKHNNLRFVGMLPPLDAPHHLRKHEWGPYREGVTLKERAPDARGTLVDVGLSKNVVVDEILEPGRRVTVAMGTDRNLLADLPRQVVSSSKPVEEELYWGYRVRYASSLSAVFKESSYEGGYDHLIGTSEHGTIIKSSELILPSFRHLLIAFGGLAGLEESIEEDNNFKSKNACEIFSSYLNTCPLQGSRTIRTEEAILISLQYFQEPISRALQISAD 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11433739 11438402 + Cp4.1LG03g10910.1 Cpe03g01423 467140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01423 378 SUPERFAMILY alpha/beta knot 64 366 IPR029028 -
Cpe03g01423 378 MobiDBLite consensus disorder prediction 46 62 - -
Cpe03g01423 378 SUPERFAMILY Nucleic acid-binding proteins 179 260 IPR012340 -
Cpe03g01423 378 Coils Coil 35 55 - -
Cpe03g01423 378 PANTHER CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED 27 374 IPR003750 -
Cpe03g01423 378 MobiDBLite consensus disorder prediction 1 36 - -
Cpe03g01423 378 Gene3D - 67 363 IPR029026 -
Cpe03g01423 378 Gene3D - 185 250 IPR012340 -
Cpe03g01423 378 CDD HsC9orf114-like 66 365 IPR003750 -
Cpe03g01423 378 MobiDBLite consensus disorder prediction 1 65 - -
Cpe03g01423 378 Pfam Putative RNA methyltransferase 66 364 IPR003750 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01423 K09142 SPOUT1; methyltransferase [EC:2.1.1.-] - csv:101207949 642.114
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01423 Cpe-Chr3:11433739 Cpe08g00249 Cpe-Chr8:1637655 1.16E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g459 . . . . . . . . . . Cma06g01425 Cma14g01689 Car06g01228 Car14g01522 Sed12g0906 . Cpe03g01423 Bhi01g00838 Tan10g0866 Cmetu06g1993 . Hepe05g1534 . Lcy11g1521 . . . . . . . . . . . Lsi05g01440 . . Cme06g00628 . Blo07g00211 Bda11g00567 . . Bpe13g00617 . Bma06g01546 . Cmo06g01428 Cmo14g01733 . . . . . . . . . . . . . Cla05g00564 Cam05g0620 Cec05g0630 Cco05g0625 Clacu05g0616 Cmu05g0584 Cre05g0652 . Csa03g01353 Chy06g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011621 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01423 Cpe_Chr03 FPKM 0.924541 0.0 1.123357 1.95713 4.295268 2.660737 2.463939 1.751432 1.277994 3.250565