Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01425 ATGGAGCTTCAGAAGCGTGTAGATCAGAGTCCCCCAGAGAGGAAAGGCCACAAGCGGAAACTGGAGGAGGAATTTGAAGAGGAACGGGAGATCGCGGTGCCTACAGGGGACGCCAAGCAAGCGTTACTCACTGAGGTCAGTGCTCAAGTTGAAATTCTCAATTCCTCTTTTTCATGGAAGGAAGCAGATCGAGCTGCTGCTAAGCGAGCTACTCATGTTCTTGCTGAGCTTGCTAAAAACGAAGAGGTAGTAAACGTGATTGTGGAAGGTGGAGCCGTGCCGGCTTTAGTCAAGCATCTACAAGCACCGCTTATTGTTGACGGTGATCGTAGTCTTAAGCCATTCGAGCACGAGGTTGAGAAGGGAAGTGCTTTTGCGCTTGGACTACTGGCTGTAAAGCCTGAGCACCAGCAACTGATAGTTGACATTGGCGCTCTGTCACACCTTGTTGAGCTATTGAAGAGACACAAGGATGGTTCTTCTCGAGCTGTGAATAGTGTTATTCGTAGAGCTGCAGATGCCATTACAAATCTTGCCCATGAGAATAGTTGCATCAAAACACGGGTTAGGATGGAAGGTGGAATTCCTCCGCTTGTTGAATTGCTTGAATTTACTGACACGAAGGTGCAAAGAGCTGCTGCTGGGGCATTACGGACGCTGGCCTTTAAGAATGATGAGAACAAAAATCAGATTGTTGAGTGTAATGCACTCCCTACACTCATTTTGATGCTTCGGTCGGAGGATGCTGCTATACATTATGAAGCGGTTGGTGTTATTGGAAATTTGGTTCACTCATCCCCAAATATAAAGAGAGAAGTTCTTCTTGCTGGAGCTTTGCAACCTGTTATTGGATTACTCAGTTCCTGCTGCTCTGAGAGCCAAAGGGAGGCAGCTTTATTACTTGGACAATTTGCGGCAACTGATTCAGATTGCAAGATTCACATTGTGCAGAGGGGTGCTGTTCGACCCTTAATTGAGATGCTTCAATCACCTGATGTACAACTACGAGAAATGTCAGCTTTTGCATTGGGGAGGTTGGCACAGGAAACTCATAATCAAGCTGGTATTGCTCATAATGGTGGTCTAATGCCATTACTGAAGCTTCTTGATTCAAAAAATGGTTCTTTGCAACACAATGCGGCATTTGCTCTTTATGGTCTTGCCGATAATGAGGATAATGTATCTGATTTTATTAGAGTGGGAGGAGTTCAGAAGCTGCAAGATGGAGAATTTATAGTGCAAGCAACAAAAGATTGTGTAGCAAAGACACTCAAGAGATTAGAGGAGAAGATACATGGAAGGGTTTTAAATCACTTGTTACATCTAATGCGTGTAGCAGAGAAGGCTGTGCAAAGACGAGTCTCTCTTGCTCTTGCTCATCTTTGTCTGGAGTTGCTTCTTGGCCTGCTTGGTTCTTCAAGTCTCAAGCAGCAGCTTGATGGTGCTGTTGCGCTTTACAAGCTTGCAAATAAGGCCATGACTCTTTCTCCTGTAGATGCTGCTCCACCATCCCCAACACCACAGGTTTACCTGGGTGAGCAGTATGTGAACAATCCGACACTATCTGATGTGACATTTCTTGTTGAAGGTCGAAGACGCTTCCATGCCCACAGAATTTGCTTGCTTGCTTCTTCAGATGCATTCCGTGCTATGTTTGATGGTGGCTATCGGGAAAAGGATGCAAAGGATATAGAAATTCCAAATATTAGATGGGAAGTTTTTGAGCTAATGATGAGATTTGTTTACACTGGATCTGTGGATGTTTCGTTGGATATTGCACAAGATCTCCTGAGAGCTGCCGATCAGTATCTCTTGGAGGGACTTAAACGATTGTGCGAATATACCATTGCACAGGATATATCATTGGAGAATGTTTCAAGCATGTATGAACTTTCAGAAGCCTTCAATGCCATATCTTTGAGGCACACGTGCATCCTTTTTATCTTGGAACAATTCGAAAAACTCGGTGCAATGCCAGGGCACTCTCATCTAATTCAGCGCATACTTCCCGAGATCCGCAATTATTTTGCCAAAGCCTTGACCAAGGCTAACAACCTCCACAGCTCACGGCTGTAG 2076 44.85 MELQKRVDQSPPERKGHKRKLEEEFEEEREIAVPTGDAKQALLTEVSAQVEILNSSFSWKEADRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPLIVDGDRSLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDIGALSHLVELLKRHKDGSSRAVNSVIRRAADAITNLAHENSCIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQETHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLHLMRVAEKAVQRRVSLALAHLCLELLLGLLGSSSLKQQLDGAVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRRFHAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFVYTGSVDVSLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEQFEKLGAMPGHSHLIQRILPEIRNYFAKALTKANNLHSSRL 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11443441 11449319 - Cp4.1LG03g10830.1 Cpe03g01425 467142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01425 691 SMART arm_5 308 348 IPR000225 GO:0005515
Cpe03g01425 691 SMART arm_5 266 306 IPR000225 GO:0005515
Cpe03g01425 691 SMART arm_5 224 264 IPR000225 GO:0005515
Cpe03g01425 691 SMART arm_5 80 132 IPR000225 GO:0005515
Cpe03g01425 691 SMART arm_5 349 389 IPR000225 GO:0005515
Cpe03g01425 691 SMART arm_5 133 180 IPR000225 GO:0005515
Cpe03g01425 691 SMART arm_5 181 222 IPR000225 GO:0005515
Cpe03g01425 691 MobiDBLite consensus disorder prediction 1 30 - -
Cpe03g01425 691 Pfam Armadillo/beta-catenin-like repeat 224 263 IPR000225 GO:0005515
Cpe03g01425 691 Pfam Armadillo/beta-catenin-like repeat 308 347 IPR000225 GO:0005515
Cpe03g01425 691 Pfam Armadillo/beta-catenin-like repeat 189 221 IPR000225 GO:0005515
Cpe03g01425 691 Gene3D Potassium Channel Kv1.1; Chain A 503 649 IPR011333 -
Cpe03g01425 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
Cpe03g01425 691 CDD BTB_POZ_ARIA_plant 509 625 - -
Cpe03g01425 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 361 IPR000225 GO:0005515
Cpe03g01425 691 SUPERFAMILY ARM repeat 59 407 IPR016024 -
Cpe03g01425 691 SMART BTB_4 522 620 IPR000210 GO:0005515
Cpe03g01425 691 Pfam BTB/POZ domain 515 618 IPR000210 GO:0005515
Cpe03g01425 691 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 685 - -
Cpe03g01425 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
Cpe03g01425 691 ProSiteProfiles BTB domain profile. 522 590 IPR000210 GO:0005515
Cpe03g01425 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 183 IPR000225 GO:0005515
Cpe03g01425 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Cpe03g01425 691 SUPERFAMILY POZ domain 514 617 IPR011333 -
Cpe03g01425 691 Gene3D - 162 266 IPR011989 -
Cpe03g01425 691 Gene3D - 30 161 IPR011989 -
Cpe03g01425 691 Gene3D - 267 497 IPR011989 -
Cpe03g01425 691 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 685 IPR044282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01425 - - - cmax:111479276 1281.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01425 Cpe08g00251 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01425 Cpe-Chr3:11443441 Cpe08g00623 Cpe-Chr8:4106217 3.65E-14 dispersed
Cpe10g00896 Cpe-Chr10:5038811 Cpe03g01425 Cpe-Chr3:11443441 5.60E-07 dispersed
Cpe03g01425 Cpe-Chr3:11443441 Cpe08g00251 Cpe-Chr8:1644011 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49262 PF00651 BTB 4.60E-25 CL0033 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01425 Cpe_Chr03 FPKM 4.999449 5.983468 4.116265 3.795972 3.353194 3.04637 3.406324 1.903255 2.141297 1.873076