Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01430 ATGGTTCCTTCTTCACCGATTCCTCTCGTAGCTTCTAACACTCTTCTCACTGCTCTTTTCCTTGCTTCTATCTGCTGCCGGAATCTCTGTCTTCTTGTTCATTCTGCAACCTGCTTGCTCGGTTCAACCATTTTGATCATTATGGCCGAACCAATATACACTGTAGCTTCTGATAGTGAAACCACTGGGGAGGATAGATCAGCATCAATCTTTCCGGAAATTGATGTTGGAATTGATATTGGTACTTCACAGTGTAGTATTGCAGTCTGGAATGGATCTCAGGTTGAGCTTCTTAAGAACACTAGAAATCAGAAGATTATGAGATCATATGTCACCTTCAAGGATGACACTCCTTCTGGTGGAGTTATTAATGAGCTAAGTCAGGAGTATGACATGCTATCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGACCCAGTTGTTCATGCAAGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGTCCATTTGTTGCAGCTTTGGTGAATAATGTATGGAGATCTACCACTCCTGAAGAAGTTCTGGCAATCTTTCTTGTTGAACTGAAAATGATGGCTGAACATCAACTGAAGCGGCCAATTAGAAATGTTGTTTTAACAATTCCGGTTTCGTTCAGCCGATTTCAGCTTACTCGGGTGGAACGGGCTTGTGCGATGGCTGGCCTTCAAGTCAGGTTGATGCCTGAACCAACAGCAGTAGCTTTATTGTATGCCCAACAACAGCAGCAGCAGGCTGCCCATGAGAACATGGGCAGTGGAAGTGAAAAGATCGCCCTTATTTTCAACATGGGAGCTGGATATTGTGATGTTGCTGTATCAGCCACAGGGGGAGGAGTGTCACAGATCAAAGCCCTGGCTGGAAGTCCTATTGGAGGTGAAGATCTACTTCAAAATACCATGAAGTATCTTTTGCCAAATGCGGAATCTATATTTTCACACCGTGGAATCGATGAGATCAGAAGGATGGGGTTACTCCGAGTTGCGACCCAAGATGCTATCCACAAGCTTTCATTCCAGTCGAGTGTTCAAATCGATGTGAACTTGGGAAATGGGTCGAAGTTATGCAAGGTTCTAAGCCGGGAGGAGTTCGAGATGGTGAATAGCGAGGTGTTTGAGAAATGTGAGAACCTTGTTAATCTATGCTTACATGATGCAAGAGTAGGGATTGAAGATTTGAGCGATGTCGTTGTAGTCGGTGGATGTTCGAACATACCGAAGATCAGAAATCTTCTGATGGGAAAAAGCAAAAAGAAGGCACTTTATGAAGGAATGAATCCTTTAGAAGCTGCTGTTTCTGGGGCAGCTTTAGAAGGTGCAGTAGCATCAGGCATTGCCGATCCGTTCGGAAGTTTAGATCTCCTTAGCATCCAAGCAACCCCTCTCGCCATCGGAATTCGAGCCGATGGAAACAGCTTCATTCCAATTATTCCCAAGAACACTACAATGCCAGCACGCAAGGAGTTGGTTTTCACAACTGTAAAAGACAATCAAAGCGAGGCCCTGATTGTTGTATATGAAGGCGAAGAGACGAGAGCAGAAGAAAATCATCTACTTGGCTATTTCAAAATCATTGGAATTCCACCAGCACCCAAAGGAATCCCTGAAATTACTATCTGTATGGACATTGACTCCTCAAATATGCTTAGAGTTCTAGCTGGGGCAAGACTCCCAGGTGTTCAACACCCTGCAACCCCTTTCATGGAAGTCAAGATGCCGACTGTCGACGACGGGCATGGCTGGTGTGCAGAGGCTCTGCATGGAAAATATGGTGCTGCCATGGACTTGGTTACATTGCGGAAGAAAAGCTAG 1860 44.73 MVPSSPIPLVASNTLLTALFLASICCRNLCLLVHSATCLLGSTILIIMAEPIYTVASDSETTGEDRSASIFPEIDVGIDIGTSQCSIAVWNGSQVELLKNTRNQKIMRSYVTFKDDTPSGGVINELSQEYDMLSGAAIFNMKRLIGRVDTDPVVHASKSLPFLVQTLDIGVRPFVAALVNNVWRSTTPEEVLAIFLVELKMMAEHQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQQQAAHENMGSGSEKIALIFNMGAGYCDVAVSATGGGVSQIKALAGSPIGGEDLLQNTMKYLLPNAESIFSHRGIDEIRRMGLLRVATQDAIHKLSFQSSVQIDVNLGNGSKLCKVLSREEFEMVNSEVFEKCENLVNLCLHDARVGIEDLSDVVVVGGCSNIPKIRNLLMGKSKKKALYEGMNPLEAAVSGAALEGAVASGIADPFGSLDLLSIQATPLAIGIRADGNSFIPIIPKNTTMPARKELVFTTVKDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPAPKGIPEITICMDIDSSNMLRVLAGARLPGVQHPATPFMEVKMPTVDDGHGWCAEALHGKYGAAMDLVTLRKKS 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11495538 11498381 - Cp4.1LG03g10670.1 Cpe03g01430 467147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01430 619 Gene3D - 76 456 - -
Cpe03g01430 619 SUPERFAMILY Actin-like ATPase domain 76 256 IPR043129 -
Cpe03g01430 619 Gene3D - 139 194 - -
Cpe03g01430 619 Pfam Hsp70 protein 76 573 IPR013126 GO:0005524|GO:0140662
Cpe03g01430 619 PANTHER HEAT SHOCK PROTEIN 70KDA 51 618 IPR013126 GO:0005524|GO:0140662
Cpe03g01430 619 Gene3D - 259 438 - -
Cpe03g01430 619 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 51 618 - -
Cpe03g01430 619 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 467 579 IPR029047 -
Cpe03g01430 619 Gene3D Actin; Chain A, domain 4 309 390 - -
Cpe03g01430 619 SUPERFAMILY Actin-like ATPase domain 272 457 IPR043129 -
Cpe03g01430 619 CDD HSP70_NBD 76 456 - -
Cpe03g01430 619 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 471 571 IPR029047 -
Cpe03g01430 619 PRINTS 70kDa heat shock protein signature 550 566 - -
Cpe03g01430 619 PRINTS 70kDa heat shock protein signature 409 425 - -
Cpe03g01430 619 PRINTS 70kDa heat shock protein signature 102 114 - -
Cpe03g01430 619 PRINTS 70kDa heat shock protein signature 214 234 - -
Cpe03g01430 619 PRINTS 70kDa heat shock protein signature 441 461 - -
Cpe03g01430 619 PRINTS 70kDa heat shock protein signature 469 488 - -
Cpe03g01430 619 PRINTS 70kDa heat shock protein signature 74 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01430 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101206971 1032.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01430 Cpe-Chr3:11495538 Cpe18g00576 Cpe-Chr18:6213170 1.71E-81 dispersed
Cpe03g01430 Cpe-Chr3:11495538 Cpe05g00794 Cpe-Chr5:4925261 5.73E-75 transposed
Cpe03g01430 Cpe-Chr3:11495538 Cpe13g00106 Cpe-Chr13:758999 4.75E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01430 Cpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.346515 0.639037 0.0