Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01434 ATGGCAAGCTCAAGTGAGAGTGAACGCAAGGAACCAGTGAACGAGCAAATGGTTGCAAACATGTATGGTACTTTAAGGTCTGAGCTCAATCAGATATACTCAAAAATCACAGAACTCGAGATGGAAGTCAGTGAACACTCTCTGGTCATTTCTGCAATTGAGCCACTTGATCCATCAAGACGATGCTACAGAATGATCGGGGGAGTGCTGGTGGAAAGAACTATCAAAGAGGTCCTGCCCGCTGTTCAACGCAACAAAGAGGGACTTGAGGAGGTGATTTCCAGACTCAACGAGGCATTGGAGAAGAAAAAGAAGGAAATTTCTGACTTGGAGGCCAAATACAAGATCAGGATTAGAAAGCCTGATGGTGAGGCTAAGGAGGAAGACAGTGGGCGTAAAGAGGGTGCAGCCCAAGGAGTCTTAGTAGGCCCTGCAAGTGAAAGTTAA 447 46.31 MASSSESERKEPVNEQMVANMYGTLRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIRKPDGEAKEEDSGRKEGAAQGVLVGPASES 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11508818 11514003 + Cp4.1LG03g10740.1 Cpe03g01434 467151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01434 148 PANTHER PREFOLDIN SUBUNIT 2 1 143 IPR027235 GO:0006457|GO:0016272
Cpe03g01434 148 Coils Coil 79 120 - -
Cpe03g01434 148 MobiDBLite consensus disorder prediction 119 148 - -
Cpe03g01434 148 Pfam Prefoldin subunit 16 118 IPR002777 GO:0006457|GO:0016272|GO:0051082
Cpe03g01434 148 SUPERFAMILY Prefoldin 19 117 - -
Cpe03g01434 148 Gene3D - 12 122 IPR009053 -
Cpe03g01434 148 MobiDBLite consensus disorder prediction 119 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01434 K09549 PFDN2; prefoldin subunit 2 - csv:101203077 279.641
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01434 Cpe08g00258 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01434 Cpe-Chr3:11508818 Cpe08g00258 Cpe-Chr8:1697950 6.21E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g505 . . . . . Bpe14g01188 . . . . . Cma14g01706 Car06g01217 Car14g01541 . Cpe08g00258 Cpe03g01434 Bhi01g00814 . . . Hepe05g1550 . . . . . . . . . Cone14ag0854 . . . Lsi05g01603 . . . . . . . . . Bma02g00847 . . . Cmo14g01749 . . . . . . . . . . . . . Cla05g00544 Cam05g0595 Cec05g0605 Cco05g0602 Clacu05g0592 Cmu05g0562 Cre05g0631 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01434 Cpe_Chr03 FPKM 10.12703 11.844918 13.771699 13.783672 9.932338 9.444759 10.630825 17.893059 17.377327 19.714579