Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01440 ATCGGAGCGTTCGAATTTGAAGCGGAGGATTCGATCGTGGACTTGCTTGAGAGGGAGGAGGCTGGAGGCGGCGGAGAGAGCGGCGGAGAGAGCGGTGGGTCTGGTGGGGTTTCGCTTGCCCCGTTTAGTCGTGGTGATCGGAGCTCCGACATGGGCGAAGCTTTATTTGAACTCGAACAAGTTCTCAGGTCCAAACAGAACAGCTTGACGATCGAGGAAGCGAATGTGCTCCAAACATGTAAGTCAAAGGCTGTTCGAGATTTTACATTTGGATTTCTCGTTGGAGGTGGTGTGACATGGGCAGGAACATGGAGGCTGAATAAATTCGTTCGGCTAAATCTTTCTGGAGGAGCTGGTGCGCTATTTGGATTAAGGAGATTTAGCAGGTCCCTAAGTTCATGCGTTGATCATATCCTTGCTCTGGATGGAAGTAGAATGCAAAAGGAGTTGGCAAATATTGTAGTGACGAAATATCACAATGATCCTCGTACCATGCAGCACATATCCAAGCATTTTTTTTATGAGGAAGTGTTTGACGATTCAACCTTGGACCGGCCAAAAATAAGGTGGCGTTATCGAAATTTCTTCAGTGACGATGTTGCGCATGCTCAGAGGACGCATTACAATGACCCTAAGGACAACTTGCATGGAAACCACCATGATTCATCCAACCGCGATTCCAATCCTAACCAGAGTGATTCCTATGGTGACCCTGATGACAAAGGAAATGCTTTTGAGTTCACGCCAGTCCTTACTAAGCCGGGCGCTGATGCTGCTACTGCAGACCCTCTAGATTACATTTTTGGTACAATGACAAGAGAAGAAGAAATTCAACATTCTAGTGCCTCTAGTCCATCACCCAAATCTCACCATCGCAGTAAAAGATACAATCGTCGGCATCGAAGACATAACCAGACAATGCCAACAGACTTTGAACACGTGTAA 945 46.88 IGAFEFEAEDSIVDLLEREEAGGGGESGGESGGSGGVSLAPFSRGDRSSDMGEALFELEQVLRSKQNSLTIEEANVLQTCKSKAVRDFTFGFLVGGGVTWAGTWRLNKFVRLNLSGGAGALFGLRRFSRSLSSCVDHILALDGSRMQKELANIVVTKYHNDPRTMQHISKHFFYEEVFDDSTLDRPKIRWRYRNFFSDDVAHAQRTHYNDPKDNLHGNHHDSSNRDSNPNQSDSYGDPDDKGNAFEFTPVLTKPGADAATADPLDYIFGTMTREEEIQHSSASSPSPKSHHRSKRYNRRHRRHNQTMPTDFEHV 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11531392 11536500 - Cp4.1LG03g10720.1 Cpe03g01440 467157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01440 314 MobiDBLite consensus disorder prediction 288 302 - -
Cpe03g01440 314 MobiDBLite consensus disorder prediction 207 223 - -
Cpe03g01440 314 PANTHER EXPRESSED PROTEIN 48 306 - -
Cpe03g01440 314 MobiDBLite consensus disorder prediction 20 39 - -
Cpe03g01440 314 MobiDBLite consensus disorder prediction 271 314 - -
Cpe03g01440 314 MobiDBLite consensus disorder prediction 207 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01440 - - - mcha:111009363 401.749
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g517 . . . . . Bpe14g01192 . . . . . Cma14g01713 . Car14g01548 Sed12g0935 . Cpe03g01440 Bhi01g00800 Tan10g0834 Cmetu06g1819 . . . . . . . . . . . . . Cone7ag0260 Cone4ag0249 Lsi05g01610 . . Cme06g00603 . . . Bda13g00116 . . Bma02g00837 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01323 Chy06g00574 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007217 1 2 0 2 1 1 1 1 1 1 1 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 4 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01440 Cpe_Chr03 FPKM 6.588945 6.080814 5.090354 5.487768 8.681417 7.806699 9.272305 3.530331 3.253513 3.415363