Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01443 ATGGCCCGCCCCAATGCTTTCAACCATAATTGCCCAATGAACTCATCAACAATCTCCGTCCGCCCGTTCAATCTCTCCGACGCCGACGACTTTCTCAGGTGGGCCGGCGATGACAGAGTAACCCGCTATCTCCGATGGAACACAATAACCTCCAAAGAAGAAGCATTAACTTACCTAGAGAAGGTCGCGATCCCCCATCCATGGCGGCGGTCCATTTGCCTGAACGGCCGTTCCGTCGGGTACGTTTCGGTCAAGCCGGAATCAGAGGAGAAATGCAGAGCGAATATCAGTTATGCGGTGGCTGCAGAGCACTGGGGAAGAGGGATAGCCACGGCAGCACTGAGGGTCGCAATTCCGGCGGCGCTGATAGATTTCCCGGAGGTGGTTAGGATTCAGGCGCTGGTGGAGGTGGAGAATGAGGGATCACAGAGGGTTTTGGAAAAATTGGGGTTTTGCAGAGAGGGGCTGTTGAGGAAATACGGATTTTGTAAGGGCGAAATTCGGAATTTTATTGTTTTCATGTCCTTGATTAAATATTCCTCCATGGCCTACATTTTAATACCCGCACCCATCATACAATCAGTCTCTATCTCGCGCTTCGAAAACCCAATTCTGTCCTTCCCTACTTCCTATAAGATACGCCGGAAGCCGGCTCCTCCCGGCGTCGGAGCCTTCAAGCGGAGTCGACAGCCGCCATCGTCGCTGCTGCCTTGTCGGAACAGTCCTAAAGACGACATGTCTGTCGCCGTTCCCATGTCGCAAATGGACGTGGATGACGAGTCATTGCCTAATTCTCGGAGTGGTAATGACAGAGAAGGATTGCTTCCGTATAATGGTAAAAGTACTGCTCATAAGAAGTATTTCTCGAGCACCATTAAAATTTTTGGGGTGGACCTATCTCCAGATAATGTGGCTGTCGCCATGGTTTATTTTGTTCAAGGGGTTTTAGGCCTAGCAAGGCTTGCGGTCAGTTTTTACTTAAAGGATGATCTGCACCTAGATCCTGCAGAGACAGCTGTAGTATCTGGCTTCTCTGCATTTCCATGGCTTGTCAAACCTTTATATGGGTTTATCAGTGATTCTGTTCCTCTTTTTGGTTATCGGAGAAGATCGTACTTGATTTTATCAGGACTGCTTGGTGCACTTTCGTGGACTTTAATGGCCACACTTGTCGATAGCAAGTATGGTGCTGCTTTCTGTATACTCCTTGGATCGCTTTCCGTAGCATTCTCAGATGTTGTTGTAGATTCCATGGTAGTTGAGAGGGCTCGTGGTGAATCCCAAAGTATGTCAGGATCTCTTCAGTCCTTATGTTGGGGTTCTTCAGCTTTTGGTGGAATAGTGAGTTCCTACTTTAGTGCTTTGTTGCCATTGATAACATCTGTGGTGGCAGTTCTTGTAAAAGAGCAGCCTGTGAGAGGAATAAATCGTCCTTCAGCTAGCTATGATTTTCTTGGGAGCTCAAGACAGCACGTTGTTGAATTGTGGGATGCTGTTAGTCAACGAAATGTGTTTCTTCCAACATTATTTATTTTCTTGTGGCAGGCAACACCACAATCAGATTCTGCCATGTTCTTCTTTACCACAAATAAACTTGGATTCACTCCCGAATTTCTAGGGCGTGTCAAGCTTGTTACATCAATAGCATCGCTTGTCGGCGTTGGGCTTTATAATGGATTTCTTAAGAAAGTCCCTCTGAGGAAAATTTTTCTAGTAACCACCATTTTTGGCAGTGCACTTGGAATGAGCCAGGTTCTCCTTGTAACGGGGTTAAATCGTGAGTGGGGTATAAGCGACGAGTGGTTTGCGATTGGGGATTCGTTGATTATAACGGTTCTTGGTCAGGCGTCTTTCATGCCTGTTCTTGTTCTAGCAGCAAAATTATGTCCAGAAGGAATGGAAGCCACACTTTTTGCAACCCTCATGTCCATATCAAACGGAGGGAGTCTGCTAGGTGGCCTGATTGGTGCCGGTTTGACGCAACTGTTCGGCGTCACCAAAGACTCGTTCGATAACCTGTCTACCTTGATAATCCTGTGCAACCTTAGTTCACTGTTGCCATTGCCACTGCTCGGCCTCCTTCCCCAGGAATCCCCAGACTCAAACTCAGAGACCACTGACATGGAGTTGAAGTCTAACTGA 2142 47.43 MARPNAFNHNCPMNSSTISVRPFNLSDADDFLRWAGDDRVTRYLRWNTITSKEEALTYLEKVAIPHPWRRSICLNGRSVGYVSVKPESEEKCRANISYAVAAEHWGRGIATAALRVAIPAALIDFPEVVRIQALVEVENEGSQRVLEKLGFCREGLLRKYGFCKGEIRNFIVFMSLIKYSSMAYILIPAPIIQSVSISRFENPILSFPTSYKIRRKPAPPGVGAFKRSRQPPSSLLPCRNSPKDDMSVAVPMSQMDVDDESLPNSRSGNDREGLLPYNGKSTAHKKYFSSTIKIFGVDLSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVVSGFSAFPWLVKPLYGFISDSVPLFGYRRRSYLILSGLLGALSWTLMATLVDSKYGAAFCILLGSLSVAFSDVVVDSMVVERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSALLPLITSVVAVLVKEQPVRGINRPSASYDFLGSSRQHVVELWDAVSQRNVFLPTLFIFLWQATPQSDSAMFFFTTNKLGFTPEFLGRVKLVTSIASLVGVGLYNGFLKKVPLRKIFLVTTIFGSALGMSQVLLVTGLNREWGISDEWFAIGDSLIITVLGQASFMPVLVLAAKLCPEGMEATLFATLMSISNGGSLLGGLIGAGLTQLFGVTKDSFDNLSTLIILCNLSSLLPLPLLGLLPQESPDSNSETTDMELKSN 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11545360 11554428 - Cp4.1LG03g10700.1 Cpe03g01443 467160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01443 713 SUPERFAMILY MFS general substrate transporter 307 685 IPR036259 -
Cpe03g01443 713 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 18 177 IPR000182 GO:0016407
Cpe03g01443 713 CDD MFS_FBT 304 681 - -
Cpe03g01443 713 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 13 173 IPR016181 -
Cpe03g01443 713 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 243 707 IPR039309 -
Cpe03g01443 713 Gene3D MFS general substrate transporter like domains 304 686 IPR036259 -
Cpe03g01443 713 CDD NAT_SF 72 118 - -
Cpe03g01443 713 Gene3D - 11 181 - -
Cpe03g01443 713 MobiDBLite consensus disorder prediction 221 243 - -
Cpe03g01443 713 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1 CHLOROPLASTIC 243 707 - -
Cpe03g01443 713 Pfam Acetyltransferase (GNAT) domain 20 151 IPR000182 GO:0016407
Cpe03g01443 713 Pfam BT1 family 313 456 IPR039309 -
Cpe03g01443 713 Pfam BT1 family 482 698 IPR039309 -
Cpe03g01443 713 TIGRFAM fbt: folate/biopterin transporter 287 706 IPR004324 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01443 - - - mcha:111009427 856.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01443 Cpe-Chr3:11545360 Cpe11g00289 Cpe-Chr11:1563201 1.70E-53 dispersed
Cpe03g01443 Cpe-Chr3:11545360 Cpe03g01444 Cpe-Chr3:11554259 1.72E-44 tandem
Cpe12g00192 Cpe-Chr12:1225788 Cpe03g01443 Cpe-Chr3:11545360 0 wgd
Cpe03g01443 Cpe-Chr3:11545360 Cpe08g00268 Cpe-Chr8:1728547 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g523 . . . . . . . . . . . . . . Sed02g1304 . Cpe03g01443 Bhi01g00794 Tan10g0825 Cmetu02g2090 . Hepe05g1562 . Lcy11g1556 . . . . . . . . . . . . . . Cme06g00599 . . . Bda13g00114 . . . . . . Cmo14g01759 . . . . . . . . . . . . . Cla05g00532 Cam05g0583 Cec05g0593 Cco05g0591 Clacu05g0580 Cmu05g0550 Cre05g0619 . Csa03g01315 Chy06g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002132 1 3 1 1 1 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 2 2 2 2 2 5 6 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49264 PF03092 BT1 1.80E-61 CL0015 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01443 Cpe_Chr03 FPKM 13.932559 15.338873 14.904554 16.206354 18.739588 20.789417 18.116585 15.92668 15.636951 14.846445