Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01444 ATGGAAATTACTCTCCGGCCACTAGATCTCACTGACATCGACGATTTCATGGTTTGGGCATCGGACGAGAAAGCAGCTCGATCCTGTTCCTGGGAGCCCTACCAGGATATATCGGACGCCATAAAGTATATCAACGACCAAGTCCTGTCGCACCCCTGGCACCGGGCCATCTGTGTCGACGGCCGGCCGGTAGGAGCGATTTCGGTGACGGCGAATGAGGCAGCGAGGGACCGGTGCAGGGGAGAGCTAGGGTACGTATTGGGATCCAAATTTTGGGGGAAAGGGATCGGGACGGCGGCGGTGAAATTGGTGGCGGAGAGGATTTTCGTGGAGCGGCCGGAACTGGAGAGGTTGGAGGCGTTGGTGGATGTGGAGAATTTGGCGTCTCAGAGAGTGGTGGAGAAGGCCGGATTTCAGAGAGAAGGCGTTCTGAGAAAATATGGAGTGATGAAAGGGCAAATTAGGGATTATGTTATGTTTAGTCTTCTTTCTACTGATCTCCAATAA 507 53.45 MEITLRPLDLTDIDDFMVWASDEKAARSCSWEPYQDISDAIKYINDQVLSHPWHRAICVDGRPVGAISVTANEAARDRCRGELGYVLGSKFWGKGIGTAAVKLVAERIFVERPELERLEALVDVENLASQRVVEKAGFQREGVLRKYGVMKGQIRDYVMFSLLSTDLQ 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11554259 11554765 + Cp4.1LG03g10800.1 Cpe03g01444 467161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01444 168 Pfam Acetyltransferase (GNAT) domain 3 139 IPR000182 GO:0016407
Cpe03g01444 168 Gene3D - 1 168 - -
Cpe03g01444 168 CDD NAT_SF 56 107 - -
Cpe03g01444 168 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 3 163 IPR016181 -
Cpe03g01444 168 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 3 164 IPR000182 GO:0016407
Cpe03g01444 168 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 166 - -
Cpe03g01444 168 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01444 - - - mcha:111009349 297.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01443 Cpe-Chr3:11545360 Cpe03g01444 Cpe-Chr3:11554259 1.72E-44 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g525 . . . . . . . . . . . Cma14g01720 . . . . Cpe03g01444 . . . . . . . . . . . . . . . . . . Lsi05g01616 . . . . . . . . . . . . . Cmo14g01760 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006036 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 5 1 2 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49265 PF13302 Acetyltransf_3 5.10E-25 CL0257 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01444 Cpe_Chr03 FPKM 24.840979 24.866508 16.418596 18.199867 23.18413 25.568392 22.033976 27.387495 28.494194 24.210014