Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01451 ATGACAATGGCGTCGATGTATTTCTGCCGTAGGCTCTTCTCTCCGGCGGGTTATTCGGCTCTTCCCGGTTTTGTGGGGGCAGTAAACCAGGAATTCCAACTGAAGTTTGGACCTTCTTGTTGTAGGCTATACAGTATCTACAGCAGTACCCATAAATTTGACTTCACGGACTTGACACGTCCCCATTCATGGTATCCAAATGCACGAAGGAAACACCGCAAAATTTTTCTGCACATGGGTCCAACAAATAGTGGCAAAACTCACAATGCTTTGAAGAGGCTTGAATCAAGTGATTCTGGTTTATATTGTGGTCCCCTGAGACTGTTGGCCTGGGAAGTCTCAAAGCGGTTGAATAAGGCTAAAATCCCTTGTGATCTGATCACTGGACAAGAAAGAGAGGAAGTTGATGGTGCAAAACATAAGGCTGTTACTGTTGAGATGGCTGATGTAACCTCCAACTACAGTTGTGCTGTTATCGATGAAATTCAGATGTTGGGATGTAAGACAAGAGGTTATTCATTTACACGTGCACTACTTGGAATTTGTGCTGATGAGCTTCATCTTTGTGGAGATGCGGCTGTTGTACCCCTTGTTCAGGAAATTCTCAAAGTAACCGGTGATGACATTGAGGTGCAATACTATGAGAGACTTTCACCTCTGATTCCAATGAAGGTTCCACTTGGACCATATTCTAATATTAGGAAGGGTGATTGCATCGTCACCTTTTCACGTCGTAAAATATATGCTTATAAGAGAAAAATTGAAAGCGAGGGTGGACATCTTTGCTCTGTAGTTTATGGTTCACTACCACCAGAAACTCGAACGAGGCAGGCAACGATGTTCAATGATACAACCAGTGAGTTTGATGTGCTGGTGGCTAGCGATGCCATTGGAATGGGTCTTAATTTGAACATCTCGAGGATCATATTTTCAACTATGGAGAAATTTGATGGTTTTGAGATGCGGGATCTCACTGTACCAGAGATCAAACAGATTGCAGGTAGAGCTGGCAGGTACGGATCCAAATTTCCCATTGGTGAAGTAACTTGTATAAATGGAGATGATTTGCCCTTGCTTCATTCATCGTTGAAGTCTGCTTCTCCCACTATAGAGAGAGCTGGACTATTTCCAACTTTTGAACTCATGTATTTATATTCCCGTCTACACCCAGAAAATGGCCTGCGGCAGATACTGGAGCACTTTGTTGAGAATGCCAAATTATCTGAAAATTATTTCATTGCTGACTGTGAAGAAATGCTGAAAGTTGCTGCCGTCCTTGATGAGATGCCTCTCAGTTTGCATGATAAGTACCTTTTCTGTATAAGCCCTGTGGACATGGCTGATGAAATTACATCCCAAGGTCTTACACAGTTTGCTACAAAATATGCAAATAAAGGCGTTGTTCGGCTACGAGAAATATTCACAGCAGGAACGCTTCAAGTGCCAGAAACACAAGCTGCACTGAAGGAGCTGGAATCCGTTCACAAGGTGTTGGATCTCTATGTCTGGTTGAGTTTCCGACTGGAGGAATCATTCCCGGACCGCGAACTGGCAGTTTCACAGAAGTCAGTCTGCAGCATGTTGATTGAGGAGTTTCTGGGAAGACTAGGATGGCAAAGACCAAAAACAAGGCAATTGAAGTCGAGTATCCGCTCAAGGTCCCTCCTATCCTCTGGTGTTAAACGACGTCTCTGA 1695 43.72 MTMASMYFCRRLFSPAGYSALPGFVGAVNQEFQLKFGPSCCRLYSIYSSTHKFDFTDLTRPHSWYPNARRKHRKIFLHMGPTNSGKTHNALKRLESSDSGLYCGPLRLLAWEVSKRLNKAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSNYSCAVIDEIQMLGCKTRGYSFTRALLGICADELHLCGDAAVVPLVQEILKVTGDDIEVQYYERLSPLIPMKVPLGPYSNIRKGDCIVTFSRRKIYAYKRKIESEGGHLCSVVYGSLPPETRTRQATMFNDTTSEFDVLVASDAIGMGLNLNISRIIFSTMEKFDGFEMRDLTVPEIKQIAGRAGRYGSKFPIGEVTCINGDDLPLLHSSLKSASPTIERAGLFPTFELMYLYSRLHPENGLRQILEHFVENAKLSENYFIADCEEMLKVAAVLDEMPLSLHDKYLFCISPVDMADEITSQGLTQFATKYANKGVVRLREIFTAGTLQVPETQAALKELESVHKVLDLYVWLSFRLEESFPDRELAVSQKSVCSMLIEEFLGRLGWQRPKTRQLKSSIRSRSLLSSGVKRRL 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11581017 11590673 + Cp4.1LG03g10750.1 Cpe03g01451 467168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01451 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 209 383 IPR001650 -
Cpe03g01451 564 Gene3D - 216 367 IPR027417 -
Cpe03g01451 564 CDD DEXQc_Suv3 73 214 IPR044774 GO:0003724|GO:0005524
Cpe03g01451 564 SMART helicmild6 248 340 IPR001650 -
Cpe03g01451 564 Pfam Helicase conserved C-terminal domain 235 340 IPR001650 -
Cpe03g01451 564 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 488 533 IPR022192 GO:0016817
Cpe03g01451 564 CDD SF2_C_suv3 218 350 - -
Cpe03g01451 564 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 46 545 - -
Cpe03g01451 564 PANTHER ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIAL 46 545 - -
Cpe03g01451 564 Pfam Suv3 C-terminal domain 1 422 463 IPR041082 -
Cpe03g01451 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 342 IPR027417 -
Cpe03g01451 564 Gene3D - 442 549 - -
Cpe03g01451 564 Gene3D - 61 215 IPR027417 -
Cpe03g01451 564 Gene3D - 55 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01451 K17675 SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] - csv:101204337 991.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01451 Cpe-Chr3:11581017 Cpe17g00363 Cpe-Chr17:2597295 1.43E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g532 . . . . . Bpe14g01202 . . . . . Cma14g01728 . Car14g01559 . . Cpe03g01451 Bhi01g00784 . . . Hepe05g1572 . Lcy11g1567 . . . . . . . Cone14ag0866 . . . Lsi05g01623 . . Cme06g00591 Blo02g00530 . . Bda13g00108 . . Bma02g00831 . . . Cmo14g01767 . . . . . . . . . . . . . Cla05g00523 Cam05g0576 Cec05g0586 Cco05g0584 Clacu05g0572 Cmu05g0542 Cre05g0611 . Csa03g01305 Chy06g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008560 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01451 Cpe_Chr03 FPKM 4.721815 5.004213 4.247831 5.031035 8.950551 6.812222 8.62839 7.985351 7.898654 8.406484