Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01453 ATGGGTTCGAAAGGAAATGATATGGGGGGCACTACGATCCCAAAGGAGACACAGAACCAGGATAGAACTCCGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGGTATTCAGAGCAGATATGATAGATTTGAAAACCCTAGATATGCAGCTGGAGAAACACTTTAGCCGTGTTTGGTCAATGACCCAGAATCAAAGGCCAAAGGAGGAGTGGGAGATTGATTTGTCTAAGCTTGACATTCAAAAAGTTATTGCTCATGGGACTTACGGAACAGTATATAAGGGTGCATATGACAACAAAAAGGTTGCAGTGAAACTGTTGGACTGGGGGGAGGATGGTCTTGCCACTACTGCTGAAACTGCTGCTCTGCGGGCATCGTTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGAACATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGTGCTACAAATCTTAAGATTCCTTCAACTGAGGATCAAAATTCACTTCCATCTAGGGCCTGTTGTGTGGTTGTTGAGTATATTCCTTGTGGAACATTAAAACAATTATTGATAAGGCACAAGAAAAGGAAACTTCCCTTTAAGGATGTGGTTCAGTTAGCTTTGGATCTCTCCAGAGGGCTTAGCTATCTTCACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATAGGTGCTCATAGATCTCTCAAAATTGCTGACTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGACATGACTGGGGAAACTGGTACCCTTGGATACATGGCCCCAGAGGTTCTTGAAGGGAAGCCATACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGCGACATGCCATACCCCGATCTTAGTTTCGTTGATGTGTCATCTGCAGTTGTTCGACAGAATCTGCGGCCCAGTATTCCGAAATGTTGCCCAAATTCTCTGGCAAATGTGATGAGGAAATGCTGGGATAGCAATCCATCCAAGCGCCCTGAAATGCATGAGGTTGTGAAAATGTTGGAAGCTATTGATACAAGTAAAGGAGGGGGGATGATTACTCGTGAGGGTTCGGCTCCATGGAGCTCTTATGAAGATTGGTTTAGAGAGAGATGTGTTGGTACTATTGCTCTAATACATCTGTTTCCTCGAAAGGTGTTTGATGGAATGCTTGAGAGAAGTGTTGTTTCGTGGACCTCCTTGATTTGTGGTTATCCTTGGACAGAATCTTCCTGGGAAGCTGTGGCTTTGTTTCTCCAAATGATCGAGGCAGGTGTTAAACCCGAATCTGTCACAATGGTGTGTGGGATATCGGCTTGTGCCAAGTTGAAAGATCTTAAACTGGCCAAGAGAATTCATGGTTACATTGATGAGACAGAAACGAGGCTTAATACTCGTATGGTCAATGTTCTTGTGGATATCTACAAGCAATGTGGAGAAGCTGGTGCTGCAAAGCGACTATATGATGAATGTGTGGATAAGAATTGGTTTTATGTGACACAATCATGTCAAACTTTGCGTGCCATGAGATATGCCTATATTGTAAGGAACATCTACTGTGATATGTTACTCGAGACAGCATTAGTTGATACGTTTGCTAGGCGTAGTGACCCTCATAGCATGATGAAAGTGTTCGACGATATGGATAGAAAAGATGCCTCGATTGACAACAGCAATGGGAATGGCAAACGAGCTACAGAATCTTACAATGAGATGCTATGGCAAGAGTTGAAACCATAG 1785 43.31 MGSKGNDMGGTTIPKETQNQDRTPNSKVAGMGSISSKDMVFRADMIDLKTLDMQLEKHFSRVWSMTQNQRPKEEWEIDLSKLDIQKVIAHGTYGTVYKGAYDNKKVAVKLLDWGEDGLATTAETAALRASFRQEVAVWHKLEHPNVTKFVGASMGATNLKIPSTEDQNSLPSRACCVVVEYIPCGTLKQLLIRHKKRKLPFKDVVQLALDLSRGLSYLHSKKIVHRDVKTENMLIGAHRSLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLEGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFVDVSSAVVRQNLRPSIPKCCPNSLANVMRKCWDSNPSKRPEMHEVVKMLEAIDTSKGGGMITREGSAPWSSYEDWFRERCVGTIALIHLFPRKVFDGMLERSVVSWTSLICGYPWTESSWEAVALFLQMIEAGVKPESVTMVCGISACAKLKDLKLAKRIHGYIDETETRLNTRMVNVLVDIYKQCGEAGAAKRLYDECVDKNWFYVTQSCQTLRAMRYAYIVRNIYCDMLLETALVDTFARRSDPHSMMKVFDDMDRKDASIDNSNGNGKRATESYNEMLWQELKP 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11593287 11597747 - Cp4.1LG03g10440.1 Cpe03g01453 467170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01453 594 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 6 374 - -
Cpe03g01453 594 Pfam PPR repeat 411 441 IPR002885 -
Cpe03g01453 594 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 6 374 - -
Cpe03g01453 594 ProSiteProfiles Protein kinase domain profile. 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01453 594 Gene3D Transferase(Phosphotransferase) domain 1 182 371 - -
Cpe03g01453 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Cpe03g01453 594 Gene3D Tetratricopeptide repeat domain 392 528 IPR011990 GO:0005515
Cpe03g01453 594 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672|GO:0006468
Cpe03g01453 594 CDD STKc_MAP3K-like 88 356 - -
Cpe03g01453 594 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
Cpe03g01453 594 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Cpe03g01453 594 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672|GO:0006468
Cpe03g01453 594 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672|GO:0006468
Cpe03g01453 594 MobiDBLite consensus disorder prediction 1 31 - -
Cpe03g01453 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Cpe03g01453 594 SMART serkin_6 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01453 594 SUPERFAMILY Protein kinase-like (PK-like) 61 356 IPR011009 -
Cpe03g01453 594 MobiDBLite consensus disorder prediction 10 31 - -
Cpe03g01453 594 Gene3D Phosphorylase Kinase; domain 1 71 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01453 Cpe-Chr3:11593287 Cpe18g00839 Cpe-Chr18:7743553 1.72E-171 dispersed
Cpe06g00332 Cpe-Chr6:1840373 Cpe03g01453 Cpe-Chr3:11593287 4.88E-17 dispersed
Cpe03g01453 Cpe-Chr3:11593287 Cpe03g01454 Cpe-Chr3:11598656 4.83E-102 tandem
Cpe17g00866 Cpe-Chr17:6706885 Cpe03g01453 Cpe-Chr3:11593287 1.07E-84 wgd
Cpe03g01453 Cpe-Chr3:11593287 Cpe08g00274 Cpe-Chr8:1762011 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62306 PF07714 PK_Tyr_Ser-Thr 1.90E-60 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01453 - - csv:101218975 614.764