Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01456 ATGGGGAATAGCCGGGAGACGAGGAATGAGTATCAGCCTGAGTCAAGAGACAGCCACAGAAAAACATGGATTTGGTTGGATGATTGGAAACAAGCAGCTGTTTCAGCTGTTCTGGTGATTTTTGATCCCCTGTGCTCAGCACAGGACCAGGCTATTCCAAGGTCTAAACCCTTTGTTCGGTTGTTGTTTGCCGGAGTCATGGCAACCTTGTTGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATTAGCCCCAAGAACTCAAAATGGCTACAGGAGAATCTTACAGACATGGATGCCAATGTAAAAGCAATGATCAGACTCATTGAAGAAGATGCAGACTCCTTTTCAAGAAGAGCAGAAATGTACTATAACAAACGTCCAGAGGTTATAAAAGTAGTTGAGGAGTTCAACCGAGCCTACCGTGCTTTAGCTGAACGATATGTCCCTGCAACTGCAGAGCTTGATGATGCACATGAAACCATGCCCCAAGCAATGCCTCCTTCTGATGCTGAAGCCCACACACCAGCAGTCCACCTCCCAAATCATGCACCGCATGACAAAGGTGACTTGCACAAGGAGTTGGGGAGTTCGTCATCAACGAATCGACTTCCATTAAGAATGACGGGAAATAACGATGGGGAAACTAATACTCGTGTAAGTAAAGCGGGTTTGAAAGAGCTCAATGAGATGTTTGCATCAGAGGGAAGCACTGAACTGCAAGTAGTTCGTCGTGAAGGTGAATTCGATGGCCATAACTTGCATAGAGTGCCCTTTCAGTTAATAAGGAACATTTGTGTTCTCAAACCTCCAATTCTGTGGTTGTCTGAAAGAGATGAAAAATTGGATTCTGAACTTCAAAGTTTAAGAAAAAGACTGAATGAGATGGAAGCTGAAAAGGAAGCTTTCTTTGTTAAATATCAGAATTCTTTGGAAAAGCTATCCAGCCTAGAGAAAGAACTTAGTTCTACTCAAAAAGATGCCAGTGGACTCGACGAACGAGCGAGCAAAGCTGAAATCGAAATAAAAATATTGAAGGAAGCCCTTCAAGATTTGAAAGCAGAGAAGAATGCAGGCCTTCTACAATATAATCAATGTTTGCAAAACATATCTAGCCTAGAAAAGCTATTATCTGACTCCCAACAAGATGCTGAAGGACATAAAGAGAGAACCGCTAAGGCCGAAATTGAAGCTCACAACCTTGAGCAACAACTTTCCAGATTAGCAGCTGAAAAGGAAGTCAGTCTTGTTCAGTATGAGCAATGCCTAAAGAAGATATCTGCTTTAGAGAATAAAATCTCTGTTTCTGAAGATTATGCAAGAACGCTCGATGAACGAATGAATCGTTCAGAGACTGAAGTGAAAATACTGAAGAGAGCTCTCGACGCTCTGAATGAAGAGAAGGAAATAGCATCTCGCCAGTATGAGCAGTGCTTGGAGAAAATTGCCAAGATGGAAACTGAAATATCTCATGCTCAAGATGAACTTGTGATGGCTAATGCAAAACTGGAGACAACAGAAGAAAGGTGTGGTCATTTGGAGCAGTCAAACCATTCACTGCAGTTTGAAGCAGACAACCTTGTACACATGATTGTTATTAAGGATCAAGAGCTTGCAGAAACACGAGATGAGCTGAAGAAACTGCAGACTCTAATGAATGAACTGACTTTTTCTTCCAATACTTCAATGAAGAATTTGGAGGATCAATTATCTGGCTTGATGGAGATGAAAGAGAAGCTTGAAGAGGTTGTTTCTAAAAAAGAAGAGCAGAGAAAGTTGCTCGAGAAAGAGATCGATCATTTGAGAGACGAAATTAACGAATCGAGTGTAAGATACCAGCGCATAATGAGACAATTGGAAGAGGAGAATGCCAAGCTGAGGGAGGCCTGTGAAAAGAACAGGAACGAGATAGAAGCACTTCATGAAAAACTCAGTTATATGGATAAACTTGAAAAGGAAAATTTGTCTTTCCTTATTGAATGTGAACAATATGAAGAAGCATCCAAGTTATCAGATAAAGTTATTGCTGAATTGGAAGGCGAAAATATGGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATCAATAAATTAAGAGGAGGAATCCGTAAGGTATTAATGGCTCTTCAAATTGACCAAGTTGAAGAGAGGATTCTGATAGTGGATATTTTGGCCAGAATTGAGGATTTGAAAACGTCCGTGTTCAAAAACAAGGACGAGAAGCAGCGACTGCTCGTTCAGAACTCGGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTGAAAGAAAACTTTATGCAGGATCAACTAGCAATGCATGAACAAGACAAGCAGAATTTAATCATTCAGGAAACAATTGCTTTCAACATCCTATCGTCGATTTTCGAAAGCTTCAAAACCGAGAAATTCTTGGAAATCGAAAGGCTTGTTCAAGACATCTGTCATCTCCAAGTGGTTAATTCTGAGACAAGAGAAGAAGTTGTGAAGTTGGCAGAGAAATCTCAGTCGAAGGACGTTGAAAATTTGCGTTTAAACGGATCCGTAGAGAAATTGGCTAAGGAGTTACATGAAACAAAAGCTTTGAATGATGAACTCAACCATCAAATTTTACTTGGAAATGATTTACTGAGGTTGGAGGCTCAAAAGCTGTCTGAAACAGAGGAGGAGCTTAAAAATTCACAAAACTTCAACATGAAACTGTCTGATACTGTTGAGGAGCTCAAGATGGAAGGTGAAGAAACAATGATGATCAAACAGAATCTAGAGAATGAGAATCTTGAACTTAAAGAAAAGTGCTTAAGCCAGGAGAATCGGATTCAATGCCTCGGTGAAGTAAATGAAAATTTGAAATCTGAAGTTGATTTATTGAACAAGGAGATAGAGAAATGCAAGATTAGAGAGGAGTGTCTGAGTCTAGAGCTACAGGAGAGAAGAGATGAGTTTGAGCTCTGGGAAGCTGAAGCCACGGCATTTTACTTTGATAATCAAATCTCGTCGATACGGGAGGTTTTATACGAGAATAAGGTACACGAACTTGTCCATGCTTGTGAAAATGCTCGGGATGAGGACGCTGAAAAAGATATGGAGATTGAAAAACTCAGAGAAAGAGTAAGTTTCCTGGAAATTGAAGTCGGAGAAATGGAGGCAGAGTTGTCTGCATATAAGCCAGCCATAGCTGCTCTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGGGCGAGGAAACCACAGCTCATGTTCATCAGAGGAGCTGTAATGTCTACAAAGATGAGATATTGGATTTGCAGGAGATTGGGGCCATGATAAAAGTAGTGGAGAAGGCTGTGATCGAGGAAAAGAAAAAACTTCACAAAGAAGCTGCTGAAGTACATGTCGAAGACCTCAGATCAGAAGGAACGTCGCGTCGAGAAGCGACAACGGAGGATGGAATTACTGATAATCCTAAGGCAAGAAAGAACAAACCTGAGAATGAAATGGTAATGAAAGATATTCCACTGGATCGTGAATCAGATAGTTCTTTCCAGAGAAGAAGCAGAAGGGAAAGTAGTGAGACCAATGAGCAAATGCTTAAGTTGTGGGAAATTGCTGCGCAGAATTGTGACCAGAATTTGATTGATAGCTCGCCACAAAGCCCCTCAGACCCACAAGTTGAGTACCCACAGTTGGAGCAATCCCCCAGCAGCAGCATTAGAGAACGAATCCGAAGAGGCCGAAAAGGAAAGATCTTAGAGAGAATTGATTCATATGTCGATCAGTTGACAGGTCTTCTAACAAGTGTTCGAGATTTGAAAAAGAGAATTGAAGTGAACATCTTCGAAATGGCTCCAAACAATGAATACGACACGGTTGAGAAACACGTAAAAGAAGTCGAGGAAGACATATTTCAGCAAATGAATATCAATGATCAACTGAAGCAGAATTTGGAACGCAGTCCCTCGTTTTTCGAGCGAATGCCATCAATAGAAATCGAGGCCACTGGAAACATCCCCTTGAGCAAACTAAGAGAGCAGGCACGAAGAGGATCTGTAAAGATACAACAACTCCAGTTCGAGGTAGAGAGCATTCAGCGCGTTGTGCTGAAACTCGAAGCCGAGAAGAAACCAAAAGGGAAGAGCACATTACCGGGGAGTAGTAAACCTCGGGTTATTCTGAGTGATTTCATCTGCAGAAGCCGAAAACGGAGGGAAAGATGGAAGAAACCATGTTCTTGTGGATGTATGAGACCTTCTACGCATGGAGACTGA 4281 41.32 MGNSRETRNEYQPESRDSHRKTWIWLDDWKQAAVSAVLVIFDPLCSAQDQAIPRSKPFVRLLFAGVMATLLHSESRRLYSWWWDSHISPKNSKWLQENLTDMDANVKAMIRLIEEDADSFSRRAEMYYNKRPEVIKVVEEFNRAYRALAERYVPATAELDDAHETMPQAMPPSDAEAHTPAVHLPNHAPHDKGDLHKELGSSSSTNRLPLRMTGNNDGETNTRVSKAGLKELNEMFASEGSTELQVVRREGEFDGHNLHRVPFQLIRNICVLKPPILWLSERDEKLDSELQSLRKRLNEMEAEKEAFFVKYQNSLEKLSSLEKELSSTQKDASGLDERASKAEIEIKILKEALQDLKAEKNAGLLQYNQCLQNISSLEKLLSDSQQDAEGHKERTAKAEIEAHNLEQQLSRLAAEKEVSLVQYEQCLKKISALENKISVSEDYARTLDERMNRSETEVKILKRALDALNEEKEIASRQYEQCLEKIAKMETEISHAQDELVMANAKLETTEERCGHLEQSNHSLQFEADNLVHMIVIKDQELAETRDELKKLQTLMNELTFSSNTSMKNLEDQLSGLMEMKEKLEEVVSKKEEQRKLLEKEIDHLRDEINESSVRYQRIMRQLEEENAKLREACEKNRNEIEALHEKLSYMDKLEKENLSFLIECEQYEEASKLSDKVIAELEGENMEQQVEVEFMYNEINKLRGGIRKVLMALQIDQVEERILIVDILARIEDLKTSVFKNKDEKQRLLVQNSVLLTLLKQLSLESEELKENFMQDQLAMHEQDKQNLIIQETIAFNILSSIFESFKTEKFLEIERLVQDICHLQVVNSETREEVVKLAEKSQSKDVENLRLNGSVEKLAKELHETKALNDELNHQILLGNDLLRLEAQKLSETEEELKNSQNFNMKLSDTVEELKMEGEETMMIKQNLENENLELKEKCLSQENRIQCLGEVNENLKSEVDLLNKEIEKCKIREECLSLELQERRDEFELWEAEATAFYFDNQISSIREVLYENKVHELVHACENARDEDAEKDMEIEKLRERVSFLEIEVGEMEAELSAYKPAIAALREDVESLKHIVLPQGEETTAHVHQRSCNVYKDEILDLQEIGAMIKVVEKAVIEEKKKLHKEAAEVHVEDLRSEGTSRREATTEDGITDNPKARKNKPENEMVMKDIPLDRESDSSFQRRSRRESSETNEQMLKLWEIAAQNCDQNLIDSSPQSPSDPQVEYPQLEQSPSSSIRERIRRGRKGKILERIDSYVDQLTGLLTSVRDLKKRIEVNIFEMAPNNEYDTVEKHVKEVEEDIFQQMNINDQLKQNLERSPSFFERMPSIEIEATGNIPLSKLREQARRGSVKIQQLQFEVESIQRVVLKLEAEKKPKGKSTLPGSSKPRVILSDFICRSRKRRERWKKPCSCGCMRPSTHGD 1426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11610725 11616690 + Cp4.1LG03g10500.1 Cpe03g01456 467173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01456 1426 Coils Coil 1025 1059 - -
Cpe03g01456 1426 Coils Coil 753 773 - -
Cpe03g01456 1426 PANTHER PROTEIN NETWORKED 4A 67 558 - -
Cpe03g01456 1426 PANTHER PROTEIN NETWORKED 4A 556 658 - -
Cpe03g01456 1426 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 79 159 IPR011684 GO:0003779
Cpe03g01456 1426 Coils Coil 1357 1377 - -
Cpe03g01456 1426 Gene3D - 478 665 - -
Cpe03g01456 1426 MobiDBLite consensus disorder prediction 165 222 - -
Cpe03g01456 1426 SUPERFAMILY Tropomyosin 350 585 - -
Cpe03g01456 1426 Coils Coil 567 647 - -
Cpe03g01456 1426 Coils Coil 444 513 - -
Cpe03g01456 1426 Coils Coil 679 699 - -
Cpe03g01456 1426 Coils Coil 374 415 - -
Cpe03g01456 1426 Coils Coil 1299 1319 - -
Cpe03g01456 1426 MobiDBLite consensus disorder prediction 1215 1248 - -
Cpe03g01456 1426 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 654 789 - -
Cpe03g01456 1426 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 776 1426 - -
Cpe03g01456 1426 Coils Coil 283 359 - -
Cpe03g01456 1426 Coils Coil 913 975 - -
Cpe03g01456 1426 Coils Coil 535 562 - -
Cpe03g01456 1426 Coils Coil 882 902 - -
Cpe03g01456 1426 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 67 558 - -
Cpe03g01456 1426 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 556 658 - -
Cpe03g01456 1426 Pfam KIP1-like protein 80 152 IPR011684 GO:0003779
Cpe03g01456 1426 MobiDBLite consensus disorder prediction 1215 1240 - -
Cpe03g01456 1426 Coils Coil 651 671 - -
Cpe03g01456 1426 MobiDBLite consensus disorder prediction 199 222 - -
Cpe03g01456 1426 MobiDBLite consensus disorder prediction 1132 1198 - -
Cpe03g01456 1426 PANTHER PROTEIN NETWORKED 4A 654 789 - -
Cpe03g01456 1426 PANTHER PROTEIN NETWORKED 4A 776 1426 - -
Cpe03g01456 1426 Coils Coil 857 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01456 - - - cpep:111790467 2518.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01456 Cpe08g00276 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01456 Cpe-Chr3:11610725 Cpe20g00914 Cpe-Chr20:8075841 1.46E-31 dispersed
Cpe12g01043 Cpe-Chr12:8676141 Cpe03g01456 Cpe-Chr3:11610725 3.33E-55 wgd
Cpe15g00022 Cpe-Chr15:156198 Cpe03g01456 Cpe-Chr3:11610725 4.20E-34 wgd
Cpe17g00868 Cpe-Chr17:6726598 Cpe03g01456 Cpe-Chr3:11610725 7.45E-55 wgd
Cpe03g01456 Cpe-Chr3:11610725 Cpe05g00028 Cpe-Chr5:121729 7.62E-129 wgd
Cpe03g01456 Cpe-Chr3:11610725 Cpe08g00276 Cpe-Chr8:1782715 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01456 Cpe_Chr03 FPKM 5.289195 5.490152 0.673445 1.340025 9.691564 9.658089 10.700861 0.0 0.422656 0.0