Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01458 ATGAAAACCTCAAGCTTCCCTCTCCCAAAATCTCTCCTCCTCATCTCCATTCTCACCCTCCTCTCCAACCCTTCATATCAAGCGACTCCCCCGCCGCCATCGCCGCCGCCGCCGCCATTTCTCCCCAACCCGAGGCTTCTCAAGGCCTACACTGCTCTCCAAGCTTGGAAACATGCCATCACTGCCGACCCAAACAACTTCACCGCTGACTGGTACGGCCCCAACGTATGCAACTACTCCGGCATTTTCTGTGCCTCCGCTCCCGACGACCCCTATATCCTCACCGTCGCCGGGATCGACCTCAACCATGCCAACCTGTCGGGCACCCTACCCGACGACCTCGGCCTCCTGACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGTACTGTCCCCGAGTCCTTCCGGTGCCTCACTCGCCTATTCGAGCTCGATCTCAGCAACAATGGCTTCTCCGGCGAATTCCCTTCTGCAATTCTCTCTCTTGCTGCTCTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGGGATCTCCCTTCTCCCCTGTTTGACATGAAACTCGATGCTCTGTTCATCAATAATAACGATTTCAAATTCTCCTTACCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCTTCCAGTTTATCCAACATGAACAATACACTCAATGAAATTATAATCACGAATAGTGGGTTGAATGGGTGTTTGCCGCCGGAATTTGGGTCGTTGAGCAATCTCGTCGTCTTCGATGTCAGTGACAACAATCTTGTCGGACCACTGCCGGAGACGATGGCCGGAATGAAGAAATTGGAGCAGCTAAATGTCGCACATAACCAATTATCCGGTGAAATTCCGGCAAGTATTTGCTCGTTGCCAAAATTGCAGAATTTCACGTACTCGTATAATTTCTTCTGCGGTGAGCCGTCAGTGTGCCTGAAACTTCAGGCCAGCGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGTAAAGCTTTCTACTCTTACTCTGTTGACTGCGGCGTCTTTGGTTGTACTCATCGGCCGCCCCCGCCGCCACCTCCTCCTCCTCCGCCCCCGCCTCCGCCTCCACCTCCGCCACCGCCACCTCCACCTCCGCCGCCGCCACCGCCACCACCGTATTATCAGTATCCATAG 1227 52.97 MKTSSFPLPKSLLLISILTLLSNPSYQATPPPPSPPPPPFLPNPRLLKAYTALQAWKHAITADPNNFTADWYGPNVCNYSGIFCASAPDDPYILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTVPESFRCLTRLFELDLSNNGFSGEFPSAILSLAALKFLDIRFNKFHGDLPSPLFDMKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLNGCLPPEFGSLSNLVVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCGEPSVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYSVDCGVFGCTHRPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYYQYP 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11620680 11621906 - Cp4.1LG03g10380.1 Cpe03g01458 467175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01458 408 Gene3D Ribonuclease Inhibitor 211 337 IPR032675 -
Cpe03g01458 408 MobiDBLite consensus disorder prediction 370 408 - -
Cpe03g01458 408 Pfam Leucine rich repeat N-terminal domain 51 84 IPR013210 -
Cpe03g01458 408 SUPERFAMILY L domain-like 49 330 - -
Cpe03g01458 408 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Cpe03g01458 408 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 21 378 - -
Cpe03g01458 408 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 378 - -
Cpe03g01458 408 Gene3D Ribonuclease Inhibitor 48 210 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01458 - - - cmos:111457817 696.812
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01458 Cpe08g00278 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01458 Cpe-Chr3:11620680 Cpe11g01106 Cpe-Chr11:9219685 1.07E-147 dispersed
Cpe12g00384 Cpe-Chr12:2744480 Cpe03g01458 Cpe-Chr3:11620680 1.05E-89 dispersed
Cpe03g01458 Cpe-Chr3:11620680 Cpe08g00278 Cpe-Chr8:1792592 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g00154 . 61 399 Leucine-rich Repeat extension Gene Families AT1G62440 55.8 8.0e-48 189.5
Cpe11g01106 CCT,CST 100 268 Leucine-rich Repeat extension Gene Families AT1G62440 71.6 2.0e-43 174.9
Cpe04g01144 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 67.6 5.0e-42 170.2
Cpe07g00999 CCT,CST 68 237 Leucine-rich Repeat extension Gene Families AT1G62440 70.6 5.0e-42 170.2
Cpe18g00446 CCT 61 230 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 4.7e-40 163.7
Cpe12g00384 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.6 1.7e-37 155.2
Cpe04g00813 . 53 382 Leucine-rich Repeat extension Gene Families AT1G62440 55.8 5.4e-36 150.2
Cpe04g01144 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 5.7e-67 253.1
Cpe11g01106 CCT,CST 43 451 Leucine-rich Repeat extension Gene Families AT4G13340 72.0 2.2e-66 251.1
Cpe18g00446 CCT 34 411 Leucine-rich Repeat extension Gene Families AT4G13340 73.1 1.2e-61 235.3
Cpe07g00999 CCT,CST 13 396 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.7e-55 214.9
Cpe02g00154 . 17 221 Leucine-rich Repeat extension Gene Families AT4G13340 62.0 1.3e-42 172.2
Cpe03g01458 CST 43 368 Leucine-rich Repeat extension Gene Families AT4G13340 66.7 2.5e-38 157.9
Cpe17g00367 . 37 231 Leucine-rich Repeat extension Gene Families AT4G13340 67.2 4.7e-37 153.7
Cpe08g00278 CST 36 369 Leucine-rich Repeat extension Gene Families AT4G13340 62.1 8.0e-37 152.9
Cpe04g01144 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 2.2e-72 270.4
Cpe11g01106 CCT,CST 75 446 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 2.3e-69 260.4
Cpe18g00446 CCT 24 412 Leucine-rich Repeat extension Gene Families AT3G24480 70.0 2.6e-68 256.9
Cpe07g00999 CCT,CST 43 396 Leucine-rich Repeat extension Gene Families AT3G24480 74.0 4.3e-63 239.6
Cpe02g00154 . 25 221 Leucine-rich Repeat extension Gene Families AT3G24480 64.6 4.0e-45 179.9
Cpe12g00384 . 30 225 Leucine-rich Repeat extension Gene Families AT3G24480 63.5 3.5e-41 166.8
Cpe03g01458 CST 43 368 Leucine-rich Repeat extension Gene Families AT3G24480 63.6 5.6e-39 159.5
Cpe17g00367 . 28 231 Leucine-rich Repeat extension Gene Families AT3G24480 61.3 3.6e-38 156.8
Cpe08g00278 CST 36 369 Leucine-rich Repeat extension Gene Families AT3G24480 58.8 2.0e-36 151.0
Cpe04g00813 . 53 383 Leucine-rich Repeat extension Gene Families AT3G24480 56.6 2.6e-36 150.6
Cpe03g01458 CST 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 64.3 8.5e-53 205.3
Cpe08g00278 CST 38 368 Leucine-rich Repeat extension Gene Families AT3G22800 66.0 2.7e-51 200.3
Cpe04g00813 . 50 382 Leucine-rich Repeat extension Gene Families AT3G22800 60.2 7.4e-41 165.6
Cpe04g01144 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 5.3e-39 159.5
Cpe11g01106 CCT,CST 86 445 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 7.6e-40 162.2
Cpe07g00999 CCT,CST 54 234 Leucine-rich Repeat extension Gene Families AT5G25550 73.5 2.2e-39 160.6
Cpe02g00154 . 61 401 Leucine-rich Repeat extension Gene Families AT5G25550 55.1 2.9e-39 160.2
Cpe04g01144 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 3.8e-39 159.8
Cpe18g00446 CCT 47 413 Leucine-rich Repeat extension Gene Families AT5G25550 61.0 8.4e-39 158.7
Cpe08g00278 CST 36 368 Leucine-rich Repeat extension Gene Families AT5G25550 66.4 1.1e-38 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01458 Cpe_Chr03 FPKM 28.938852 32.403698 42.217041 39.07608 23.715366 23.556705 23.932648 4.585226 3.377892 3.686054