Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01463 ATGGCTGTTCCTGAAAAGGATCCAAGAGAGGAAGTGATTCAGGCATGGTATATGGATGATAGTGACGAAGACCAGAGGCTTCCCCATCACCTTGAGCCCAAGCAGTATCTGTCCCTGCAACAACTGGATGAACTTGGAGTTCTGAGCTGGAGACTAGACGCAGACATATATGAAACAGATGAGGAATTGATGAAGATACGTCGTGATCGTAATTACTCCTACATGGACTTTTGTGAGGTCTGTCCAGAAAAGCTTCCTAATTATGAAGAGAAGATTAAAAGCTTTTATGAGGAACACCTTCACATCGATGAGGAGATCCGTTATTGTGTGTCTGGAAGTGGTTATTTTGATGTTAGGGATCTGAATGACAAATGGATTCGCGTTTGGGTAAAGAAGGGAGCAATGATCGTGTTGCCTGCTGGAATTTATCATCGATTTACTCTTGATTCTGACAATTACATCAAGGCTATGCGACTCTTTGTTGGTGATCCTGTGTGGACTCCTCACAACCGTCCCAACGATCATCTTCCCGCAAGGAAGGAGTATCTTAAATGTTTTGTGGAGAAGGAAGCTGGTAAGCAAGCCGTTGATGCTGCAGCATGA 603 43.95 MAVPEKDPREEVIQAWYMDDSDEDQRLPHHLEPKQYLSLQQLDELGVLSWRLDADIYETDEELMKIRRDRNYSYMDFCEVCPEKLPNYEEKIKSFYEEHLHIDEEIRYCVSGSGYFDVRDLNDKWIRVWVKKGAMIVLPAGIYHRFTLDSDNYIKAMRLFVGDPVWTPHNRPNDHLPARKEYLKCFVEKEAGKQAVDAAA 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11642018 11643918 + Cp4.1LG03g10550.1 Cpe03g01463 467180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01463 200 Gene3D Jelly Rolls 3 188 IPR014710 -
Cpe03g01463 200 CDD cupin_ARD 39 168 IPR004313 GO:0010309
Cpe03g01463 200 Pfam ARD/ARD' family 14 168 IPR004313 GO:0010309
Cpe03g01463 200 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 13 176 IPR027496 GO:0016491|GO:0019509
Cpe03g01463 200 SUPERFAMILY RmlC-like cupins 14 186 IPR011051 -
Cpe03g01463 200 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 1 6 198 - -
Cpe03g01463 200 PANTHER ACIREDUCTONE DIOXYGENASE 6 198 IPR004313 GO:0010309
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01463 K08967 mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] - csv:101222292 392.889
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01463 Cpe12g00175 CCT
Cpe03g01463 Cpe08g00283 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00175 Cpe-Chr12:1138386 Cpe03g01463 Cpe-Chr3:11642018 6.72E-93 wgd
Cpe17g00164 Cpe-Chr17:1038124 Cpe03g01463 Cpe-Chr3:11642018 2.86E-09 wgd
Cpe03g01463 Cpe-Chr3:11642018 Cpe08g00283 Cpe-Chr8:1821665 4.54E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g556 . . . . . . Bma04g00762 . . Cmo17g00199 Cma06g01371 Cma14g01745 . Car14g01573 . Cpe08g00283 Cpe03g01463 . . . . . . . Cla06g00613 Cam06g0651 Cec06g0654 Cco06g0657 Clacu06g0638 Cmu06g0632 Cre06g1399 . . Cone7ag0278 Cone4ag0270 Lsi05g01636 . . . . . Bda11g00597 . . Bpe13g00587 . . Sed09g0733 Cmo06g01384 Cmo14g01782 . Cma17g00207 . Car17g00182 Cpe12g00175 . Bhi12g02240 Tan06g2482 Cmetu05g0857 . . . Lcy13g0312 . . . . . . . . . Chy06g00546 Cme05g00490
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002489 2 2 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01463 Cpe_Chr03 FPKM 8.694736 6.594331 7.335154 5.773304 10.51035 12.93274 7.13086 10.578671 9.826829 10.205075