Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01470 ATGATCAACGATGATTCTCTTCTCGCAACGCTCAATACTTCTCATGGAATTAATGCTGGAGACGTCAAAAAGATTCAGGACGCAGGGATATACACCTGCAACGGTTTGGTGATGCTCACGAAGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCAAGCGGTGAGAGAATCAGTCACCACTTCTCTATTATCCACGAATTTTGGTTATATCACTGGAAGCAATGCTCTGCTCAGGGCAAGCTGCTTCTACTTAGTCCTTGATTATTGTTTGCGGAGAAAGTCTGTGGTTCGCATTACGACTGGAAATCAGGCTCTCGATTTAGGAGGAAAGTTATGCTTTATGACCCAACCTGATCGAATTGTGCCTATAGCTGAAAGATCTGGCGTGGACCCGGGAGCTGTCCTTGACAATACTGTTGATGCTCATCACACTTATTTTAGTGGATTTCACCGGAAGGGGAGAACTCGCGGATCGCCAGGTCGAATCAAATAG 495 45.66 MINDDSLLATLNTSHGINAGDVKKIQDAGIYTCNGLVMLTKKVDKICEAAEKQAVRESVTTSLLSTNFGYITGSNALLRASCFYLVLDYCLRRKSVVRITTGNQALDLGGKLCFMTQPDRIVPIAERSGVDPGAVLDNTVDAHHTYFSGFHRKGRTRGSPGRIK 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11664030 11666697 - Cp4.1LG03g10450.1 Cpe03g01470 467187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01470 164 Gene3D - 8 67 - -
Cpe03g01470 164 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 117 143 - -
Cpe03g01470 164 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 13 110 - -
Cpe03g01470 164 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 13 110 - -
Cpe03g01470 164 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 117 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01470 K10872 DMC1; meiotic recombination protein DMC1 - csv:101221817 124.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01470 Cpe08g00289 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01470 Cpe-Chr3:11664030 Cpe08g00289 Cpe-Chr8:1844423 2.98E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029477 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01470 Cpe_Chr03 FPKM 48.4538 52.618927 40.206676 37.277313 80.416458 81.198105 75.049667 52.227154 51.18428 45.742043