Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01473 ATGCCAGTACGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAAACCCACTTGCAGAACTCTGTTCAAAAACCTCAAAAATCAACCCAAAATGGCAAAGGCCCGCCGAATCTGGAACATCAAACCATCAAATGTCGAAACCCATCTTCTCCTCCGAGCAAAAACAGAGGCAGGAGAAGAAGCAGAGGCGGCCGGAAATCCGATCAGGGGGAAGTTTACATGAGACCCAGTTCTCGGCCCTGCACAGTGGCGCGTAAACCAGATGAACCGGAATTTAACGCCGGAGCTCTGGTGGCAAGTACTAATCCAAATGGTGGTAACATTTGTGGAATGGAAATGGGTTATCGAAATTCAAGCAAGTCCTTGAGTTTTGCCCCAAGGCCTGGATTCGGACAAGTTGGGACAAAATGTATTGTGAAAGCAAACCATTTCTTCGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTCACAATTACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCATGGCTGAATTGGTGAGATTATACAGAGATTCTGAGCTGGGTAAAAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTATGGAAAGAGTTTAACGTCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGAATATAAAGTGATTCTTAGGTTTGTTGCTCGTGCAAATTTACACCATTTGGGTCAGTTTCTGGCGGGTAAGCGTGCCGATGCTCCACAAGAAGCTCTTCAAATACTGGATATTGTATTGAGAGAGTTGTCATCCAAAAGGTACTGTCCTATAGGGAGATCCTTCTTTTCTCCTGATATTAGATCACCTCAGCGGCTCGGTGATGGGCTAGAGTCATGGTGTGGGTTTTACCAAAGTATAAGACCCACTCAAATGGGACTGTCTCTGAATATTGATATGGCTTCAGCTGCATTCATTGAGCCTCTCCCTGTCCTTGAGTTCGTTGCTCAGCTACTAGGGAAAGATGTATTGTCCCGGCCATTGTCTGACGCTGATCGAGTAAAGATTAAAAAGGCTCTTAGGGGGGTGAAAGTTGAAGTAACACACCGGGGAAATGTAAGGCGGAAATATCGGGTTTCGGGTCTGACTTCACAACCTACACGAGAATTAGTATTTCCTGTTGATGACAACTCAACCATGAAATCAGTTGTTGAATACTTCCAAGAGATGTATGGCTTCACCATTCAACACGCACATCTCCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGCGAATTACTTGCCAATGGAGGCCTGCAAAATTGTTGGGGGGCAAAGATATACAAAGAGATTGAATGAGAAGCAAATAACTGCACTTCTAAAAGTCACGTGTCAAAGACCGAGGGATCGAGAAAATGACATTTTGCAGACTGTTCAACATAATGCTTATGATATGGATCCTTATGCCAAGGAGTTCGGGATTAAAATCAGTGAAAAGCTGGCTTCTGTTGAAGCTAGAATCCTCCCTCCTCCCTGGCTCAAATATCATGATACTGGAAAAGAGAAGGATTGCTTGCCTCAAGTTGGCCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAATCGGTGGGCGTGCATCAACTTCTCTAGGAGTGTACAAGAAAGTGTTGCTCGTGGGTTTTGTTCCGAACTTGCTCAAATGTGTCAAGTGTCGGGAATGGAATTCAATCCAGAACCTGTTATTCCAATATACAATGCCAGGCCAGACCAGGTAGAGAAAGCTTTGAAGCATGTTTATCATGCCTCCATGAACAAGACTAAAGGGAAAGAGTTAGAGCTTTTATTAGCTATTTTACCTGACAATAACGGGTCACTTTACGGTGACCTTAAGCGAATTTGTGAAACCGATCTTGGTTTAATATCACAATGCTGTCTTACGAAACACGTTTTCAAGATTAGTAAGCAGTACCTTGCTAATGTGTCACTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATCAGCTGCAGGATACCGCTTGTGAGTGACATACCAACAATAATATTTGGAGCCGACGTGACCCATCCAGAGAACGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTAGTAGCCTCCCAGGATTGGCCTGAAGTGACTAAATATGCTGGACTAGTATGTGCTCAGGCTCATAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCAGGATCCTGTCCGTGGTACTGTCAGTGGTGGCATGATCAGGGATCTTCTGGTTTCCTTTAGGAAAGCAACAGGGCAGAAGCCTCTCAGAATAATATTTTACAGGGATGGCGTAAGTGAAGGACAATTCTACCAAGTATTACTTTATGAGTTGGATGCAATCAGGAAGGCATGCGCTTCTTTAGAACCGAATTACCAACCACCCGTAACGTTCATTGTCGTTCAAAAACGACACCACACACGATTGTTTGCCAACAACTATCGGGATAGAAGTAGCACAGACAAGAGTGGGAACATTTTACCTGGCACCGTAGTTGACTCCAAAATATGTCACCCAACAGAATTTGATTTCTATCTCTGTAGCCATGCTGGAATTCAGGGGACAAGTCGGCCAGCACATTATCATGTTCTTTGGGATGAAAACAATTTTACTCCTGATGGAATTCAGTCATTAACGAACAATCTTTGCTACACGTATGCAAGGTGTACACGTTCGGTTTCTGTTGTTCCTCCAGCATACTATGCACATTTAGCTGCATTCCGAGCTCGATTCTACATGGAGCCAGAGATGCAGGAGAATGGCTCAGCTGGTCGTTCTTCCAAGAGCACACGCGCTACTGGAGAGACTGGGGTTCGACCTTTGCCAGCTCTGAAGGAAAATGTGAAAAGAGTAATGTTTTACTGCTAG 2955 44.06 MPVRQMKESSEQHLVIKTHLQNSVQKPQKSTQNGKGPPNLEHQTIKCRNPSSPPSKNRGRRRSRGGRKSDQGEVYMRPSSRPCTVARKPDEPEFNAGALVASTNPNGGNICGMEMGYRNSSKSLSFAPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYRDSELGKRLPAYDGRKSLYTAGELPFVWKEFNVKLVDEEDGVSGPKREREYKVILRFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDADRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDMDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPDQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTPDGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSAGRSSKSTRATGETGVRPLPALKENVKRVMFYC 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11678135 11685346 - Cp4.1LG03g10410.1 Cpe03g01473 467190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01473 984 CDD PAZ_argonaute_like 333 447 - -
Cpe03g01473 984 SMART DUF1785_2 281 333 IPR014811 -
Cpe03g01473 984 PANTHER PROTEIN ARGONAUTE 10 57 983 - -
Cpe03g01473 984 Pfam Argonaute linker 2 domain 474 520 IPR032472 -
Cpe03g01473 984 Pfam Mid domain of argonaute 531 608 IPR032473 -
Cpe03g01473 984 Gene3D - 512 685 - -
Cpe03g01473 984 SMART Piwi_a_2 622 943 IPR003165 GO:0003676
Cpe03g01473 984 Pfam Argonaute linker 1 domain 282 331 IPR014811 -
Cpe03g01473 984 MobiDBLite consensus disorder prediction 947 966 - -
Cpe03g01473 984 Gene3D - 691 984 IPR036397 GO:0003676
Cpe03g01473 984 MobiDBLite consensus disorder prediction 15 54 - -
Cpe03g01473 984 MobiDBLite consensus disorder prediction 1 88 - -
Cpe03g01473 984 ProSiteProfiles PAZ domain profile. 334 448 IPR003100 GO:0005515
Cpe03g01473 984 SUPERFAMILY PAZ domain 328 488 IPR036085 GO:0005515
Cpe03g01473 984 SUPERFAMILY Ribonuclease H-like 610 943 IPR012337 -
Cpe03g01473 984 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 983 - -
Cpe03g01473 984 SMART PAZ_2_a_3 338 470 IPR003100 GO:0005515
Cpe03g01473 984 Pfam PAZ domain 360 464 IPR003100 GO:0005515
Cpe03g01473 984 Gene3D paz domain 327 452 - -
Cpe03g01473 984 ProSiteProfiles Piwi domain profile. 622 943 IPR003165 GO:0003676
Cpe03g01473 984 MobiDBLite consensus disorder prediction 949 963 - -
Cpe03g01473 984 CDD Piwi_ago-like 492 942 IPR045246 -
Cpe03g01473 984 Pfam N-terminal domain of argonaute 138 272 IPR032474 -
Cpe03g01473 984 Pfam Piwi domain 623 942 IPR003165 GO:0003676
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01473 Cpe08g00291 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01080 Cpe-Chr2:9916388 Cpe03g01473 Cpe-Chr3:11678135 0 dispersed
Cpe03g01473 Cpe-Chr3:11678135 Cpe20g00042 Cpe-Chr20:188486 0 dispersed
Cpe04g01153 Cpe-Chr4:9878341 Cpe03g01473 Cpe-Chr3:11678135 0 transposed
Cpe08g00292 Cpe-Chr8:1875661 Cpe03g01473 Cpe-Chr3:11678135 8.85E-14 transposed
Cpe20g00716 Cpe-Chr20:6089372 Cpe03g01473 Cpe-Chr3:11678135 0 transposed
Cpe03g01473 Cpe-Chr3:11678135 Cpe08g00291 Cpe-Chr8:1866829 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01473 K11593 - csv:101221352 1927.91