Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01490 ATGAATGAGGACTATAAAAGCATTGAACCGGGGACGGATTTAGGACTTGGGTTGGGTCACACAGACCAATGCATTCAGGGAAGATTGACCAACAAATTAGGTGTAGGTGCAAATGCAGGTTCAATGGTGGATGTGAAATATGTTACCACCGACTCCCTGTCTGAACTAGTTTGGTCTCCACACGAAGGTTTGAGCCTTAGATGCGCGAATTCCAGCTTCAATAATAGAAAAACTCCGATCTTGTGGGATGCAGCAGCCAATAACGCAAGTTTTGTACTGCCACGAAGTGTAATAGCAGGGAAATCTACTTCCAATAATTTACTTGATAATAGAACTATTACTATTTCACAAGCAGAGAGTCAATTGAAGAATATATCTGAGGGTAAACAAACTTCAAATAATACCAGTTCTGATGATGCTGCCTGCATGACAAGCGAAGCACATATGCATAAACTACAGAAAGGGGTGGGAAACCTTGCAAACGAAACAGTTTGCAGGGCAGCAGTATCTGTTGTATGTTCTAAACAGGAAGATCTACAAGCAACTGGAGTGGATATAACTGATGCAGGAAACATTCTGGTGAACGAAGTATTGACAGTTGGGAAAAATGACTGCTCATACTTGCCAGTATGTGTGAACAGAATAAATGAAGTATCAATGAAGCAAGGTGAACCTGAGCTTGATAAAGTGCAGCATGACTTGTTAGATATGGATCCAAATGGTGGAGACATAAATGAAGGTCATAATAGTACCGCAGGAAAGGGTGTTCTTCAACCCTTGAATGTGTTTGATCCTACTGTCTCTCATCCAACTTTTTTGGGGAAACTGGAATCATCTGCAGAAAATGACGTACTAAATATAAATGATAAAATCGGTGGGTTTGAGGGAAGTAAAATTTTAGTGACAGTGGTGGATTCTTCCCATGAAGTGAGAGGCAGTAACCAGCCAGATGGTAAAGACAATTGCAAAGACACGGGTGATTCAGCTTCTCCAAGTAACGGTGGTATGCATTGGATACAAAGGAAAGGCAAGGAAAAGGCTCTGTCGGATGGTAATGTTCATGGAAGAATGTTGAACAATGAAGACAACAGCTACGGAAGTGTTGAAAGCTGTAACAGTGCTTTTCTTGCAACTTCGAAGAGGCGATGGGGCTTTGAGCAACACTTAATTGTTGGGAACAAAAGAGCCAAAATGCAAGACGATAATGCTTCTGGTCCAACGTCGAACTTAGGTCAAGACAGCTCTTTCATGAACTGGATATCTAACATGGTGAAAGGATTCTCAGAGTCAATACAAGAGGAGGCACCTTCTCTTGACCTTACCCTTGCAAAACCTGATGTTGAACATAGAGGCCTAAATGAAGAACTGATGGACAAGAAGATTAATACTCCTGGGGTCGGTGGCATTGGTTTCCAATCTATCTTCCGGTCCTTGTATGATCCAATCACGAGAGGTGAGGACGGAGCGCCTAGTGCAACCAAACAAGAAGCTAAGGAGATTGAAATGATTAAAAACAGTTGTGATCTTAATGCAACTCCAATAGCATGTTTTGGAGAGTCTGATAAATTTGGCAAACAACGTCTGCTAAACAATGAGAATGAGACAGAGTTTTTATCTGGAAATGAACCAACCATACTAATTCAACTGAAGAATTCACCTGAAATTTCTTGTGGCAGTCATCCAAGTCATAAAACCAAGTCTGAGGAGAACTTGAATTCATGCAATCTTGTAAGTGGTGCTGGAACAGGTGAAGTTATCCACCACTCTGCTTTGGATAAATGCAAGTCCAACAGTACAGAGAATGTTGACTGCGATCTACCATGTGGAAAGGTTAACCATTCTGCTGGTAATACAAGTGATCCTCTCAAAAGCTTGTGGATTTCCCGTTTAGCCGCAAAAACCTCTGGGGTTATGGCAAACCCAGAAACTTGCAACCTAAATACCAAGGATGATTCCCAATGTTCCATGCACAGTCCTGGACTGATTCCTTGCCCTCAAAATCAAATTGGTCATCATTCCATGGATGACTTGGACACTGCTGTTAGTAAGGAACAACGTAATACAGCTAGTTCTGAGGCTTCTCCTGGTCATAAGGAGTTCAAAAGCCATAATGAGCAGAAATCCATTAGTAAGTTCAAATCTGTTTTACGTTCTCCTAAAGTAAGAAGTCCAGAGGCGATGGCTTCTGTCTTTGCTAAGAGATTAGGTGCATTCAAACACATCATACCGTCAGATTTGACTGTAAATGTGGGAAATGAAACCGTGACCTGTTTCTTTTGTGGCACAAGAGGTCATAGTCTACATAATTGTTCTGAAATTACAGAAAGAGAAATTGAGGATCTTTCAAGAAATATCAGGTTGTGTAATGAAACAGTAGATCCCCCTTGTTCGTGCATACGGTGCTTTCAGCTCAATCACTGGGCTATTGCGTGCCCACTTGCTGCCTCGAGAGGTCAACAGCCAACTTTGTCCCATGCGTCTTTGGCTGATTGTTACGATACTGGTGAGCTCCAACTTGCTTCTGGGATTGGTTTAAGTGCAAAACCCCAACACGTTGAGGATAGAAAAAAGAACAGTGTTGCATCTATGCTAGATGATACTGATGATCCCAATATTGAAACTGATCATAGACCTGATTGCAAAGTCACTGAAGAAGTGAAGTCTGCAGCAATGTCGATTCCAAAATGTGTTATTCAAAGATCTCCAGAGAAAAGTTCGAAAGGAAGTAAGATGGTCCATGTCGACAGCTTTGTTGTTGACAAGCCGAATTCCACTATACCACAAGTGGTCTTCAAAGCAGTAAAAAAACTTCGACTGTCTCGAAGCAATATTCTCAAGTGTATGAACTCCCACATGTCACTGTCACTTCTTGATGGTTTTTTCTTGCGTATTCGGCTCGGGAAGTGGGAAGAAGGACTTGGGGGAACTGGGTACCATGTGGCTTGCATAAAGGGTGCACAACTCACAAAAAATTCTATTTCTGTTATAGTTCGAGGGGTGGAATGCCAAGATGAGCTGAAGGCATGGTGGTGTACAGCTTCGAAGGATGGCAGCAGAGTTCTTCCTCTGGCCGCAGATTTAAGAGCCAAAGTGAAAAAGAAAAAGGAGTTGGGTCTATAA 3120 41.99 MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSPHEGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAESQLKNISEGKQTSNNTSSDDAACMTSEAHMHKLQKGVGNLANETVCRAAVSVVCSKQEDLQATGVDITDAGNILVNEVLTVGKNDCSYLPVCVNRINEVSMKQGEPELDKVQHDLLDMDPNGGDINEGHNSTAGKGVLQPLNVFDPTVSHPTFLGKLESSAENDVLNINDKIGGFEGSKILVTVVDSSHEVRGSNQPDGKDNCKDTGDSASPSNGGMHWIQRKGKEKALSDGNVHGRMLNNEDNSYGSVESCNSAFLATSKRRWGFEQHLIVGNKRAKMQDDNASGPTSNLGQDSSFMNWISNMVKGFSESIQEEAPSLDLTLAKPDVEHRGLNEELMDKKINTPGVGGIGFQSIFRSLYDPITRGEDGAPSATKQEAKEIEMIKNSCDLNATPIACFGESDKFGKQRLLNNENETEFLSGNEPTILIQLKNSPEISCGSHPSHKTKSEENLNSCNLVSGAGTGEVIHHSALDKCKSNSTENVDCDLPCGKVNHSAGNTSDPLKSLWISRLAAKTSGVMANPETCNLNTKDDSQCSMHSPGLIPCPQNQIGHHSMDDLDTAVSKEQRNTASSEASPGHKEFKSHNEQKSISKFKSVLRSPKVRSPEAMASVFAKRLGAFKHIIPSDLTVNVGNETVTCFFCGTRGHSLHNCSEITEREIEDLSRNIRLCNETVDPPCSCIRCFQLNHWAIACPLAASRGQQPTLSHASLADCYDTGELQLASGIGLSAKPQHVEDRKKNSVASMLDDTDDPNIETDHRPDCKVTEEVKSAAMSIPKCVIQRSPEKSSKGSKMVHVDSFVVDKPNSTIPQVVFKAVKKLRLSRSNILKCMNSHMSLSLLDGFFLRIRLGKWEEGLGGTGYHVACIKGAQLTKNSISVIVRGVECQDELKAWWCTASKDGSRVLPLAADLRAKVKKKKELGL 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11768741 11776336 - Cp4.1LG03g10210.1 Cpe03g01490 467207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01490 1039 Coils Coil 771 791 - -
Cpe03g01490 1039 Gene3D - 928 1003 IPR036128 GO:0003677
Cpe03g01490 1039 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 58 1038 - -
Cpe03g01490 1039 SUPERFAMILY Plus3-like 930 1036 IPR036128 GO:0003677
Cpe03g01490 1039 MobiDBLite consensus disorder prediction 307 337 - -
Cpe03g01490 1039 PANTHER UNCHARACTERIZED 58 1038 - -
Cpe03g01490 1039 SMART rtf1 928 1015 IPR004343 GO:0003677
Cpe03g01490 1039 SMART c2hcfinal6 797 813 IPR001878 GO:0003676|GO:0008270
Cpe03g01490 1039 SMART c2hcfinal6 756 772 IPR001878 GO:0003676|GO:0008270
Cpe03g01490 1039 MobiDBLite consensus disorder prediction 849 877 - -
Cpe03g01490 1039 MobiDBLite consensus disorder prediction 681 706 - -
Cpe03g01490 1039 Gene3D - 750 827 - -
Cpe03g01490 1039 MobiDBLite consensus disorder prediction 848 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01490 - - - csv:101216376 1614.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01490 Cpe_Chr03 FPKM 0.877955 0.690441 0.205911 0.193571 1.773593 1.510084 0.838647 0.11026 0.0 0.16877