Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01496 ATGGCTGGTGCTGTTAGTGAAGAGGCTTTAGGGATGAGGTCCGTGGAGAGTTTTGCAAATGGGCATCACAGTCAGTCTGGGGAAGCATTGGCTGAATGGAGGTCTTCCGAACAAGTGGAAAATGGAACACCATCGACTTCACCACCATACTGGGATACTGACGACGACGACGAGGAGGCTGGTACGCTTCTTTCATACCTAGGACCAAAACCATCAGAATTGTATGGAAAACATACATGGAAGATAGATAAATTTTCTCAACTTAACAAACGAGAACTTCGAAGTAACGCTTTTGAGGTTGGGGGCTACAAATGGTACATTTTAATTTATCCTCAGGGCTGTGATGTCTGCAATCATCTCTCTCTGTTTCTTTGTGTCGCAAATCATGACAAACTCCTTCCAGGTTGGAGCCATTTTGCACAGTTTACAATAGCAGTGGTGAATAAGGATCCAAAGAAATCAAAATATTCTGATACGTTACATCGGTTCTGGAAGAAAGAACATGACTGGGGATGGAAAAAGTTCATGGAGCTTTCAAAAGTACTAGATGGTTTTATTGACGCTGACACTCTCATAATAAAGGCACAAGTTCAAGTGATTAGGGAGAGAGCTGATCGGCCTTTTCGTTGCCTTGATTGTCAGTATAGGAGAGAACTTGTTAGAGTATATTTGACTAATGTTGAGCAGATATGTCGGCGTTTTGTGGAAGAGAGAAGAAGCAAGCTGGGGAAGCTGATAGAGGATAAAGCTAGATGGTCAAGTTTTCGTGCGTTCTGGTTGGCAATTGACCAGAATTCTAGACGACGTATGTCTAGGGAAAAGACAGATACAATTCTGAAAGTGGTTGTAAAACACTTCTTTATAGAGAAGGAGGTGACATCTACTTTAGTTATGGACTCATTATACAGTGGATTGAAGGCTCTCGAAGGGCATTCCAAGAGTAAAAAGGGAAAAGCAAAACTATTAGATGCTGAAGAGATGCCAACTCCAATAGTTCATATCGAGAAAGATACATTTGTTTTGGTGGATGATGTGCTATTACTGCTCGAGAGGGCTGCTGTTGAACCATTACCACCAAAAGAGGAGAAGGGCCCTCAAAATCGTACAAAGGATGGTAGCTCTGGAGAAGACTTCAACAAAGATACCATTGAACGCGATGAAAGGCGTCTTACAGAATTGGGTCGTAGGACTGTGGAAATATTTGTTCTTGCCCATATCTTTAGCAGCAAAGTTGAAGTTGCCTATCAGGAAGCTGTTGCATTGAAGAGGCAAGAGGAACTCATTCGTGAAGAAGAGGAAGCGTGGCAGGCTGAAAGTGAACAAAAGGCTAGGCGATTAGCATCAGAAAAGGATAAGAAATCAAAGAAAAAACAGGCTAAACAAAAACGTAACAATCGCAAAGGTAAAGATAAAGGGAGAGAAGAGAAGGCAAATTTGACTGTGCTGATCAGAGAACAAGTAAATCCTAGCAGTGGGAAGGACGAAGACGCCATTGTGGATAAGGTGCAGCCTGTGCTTGAAAAGTCTGACTTGCCCGAGATTGTATCTGATATCTCTGATTCTGTTGAAGGCCCTGGTGAAGTACTTCAGCCTGATTCAGAGGACAGAGATGCCAGTACTGTCAATTGGGACACTGATACATCAGAAGTCCATCCCTCAACAGAAGCAAGTAGCAGTGGGATTATCAGTCTGTCTTCTGCCCAAACACCCTTATCTGACAAGAAGGGCTTGTCTGTTATGGATGATAGCTCTTCTACGTGTTCTACTGATTCTGTTCCATCCGTGGTAATGAACGGCCCATATAAGGAGAATTCCTTTCACAACTACAAGAAGCAGAAATCACCTAGCATTGGAAAGAATCGGCAGAAGGATGCAGCATATGATCGGAACATTTGTGCTAATGAAATGGATGGTCAGTCGTCAGAGCTTACAGCTGACAAAGAGGACCGGAGTGATGTTTGTGGTAGTAATAAGTCTAAAGAGTCCGATCCCGTGGCCATTAATCATTCCCTCCGGGGTAAAGTAAAAAGGGTTGACCAGCAGGCAGTTAAGAAGGAAGAAAAGGTTATTTCATTGCCAAAAGACCGAAGCTCTAAAATCCAGGTTGATATGGAAAGGATACTTAGAGATACACCAGCAGCTGTACCATCCTCCCCTCAGAACCACCAAGATCATATGCCACCAACTGCTGAACAGAAGTTGAATAATCAGAGTATTGCTACCGTTGATCCCATTCAAATTAAAGCATCATCGTCAAATAGCGCACATCAGATGGAGAAGACTATTCCTGCAGTTACCTCATCCCATGTTGTTAGTGCAGTAAAAGCAGAGGGTCAGAAGTCTGCAATTCCAAAACCAACTGAAAAGGCTTCCGCACAGCAAGCTCCTATGATGTCAAGGCCTTCTAGTGCACCTCTAATTCCTGGTCCAAGGGCTACAGCACCTGTTGTTACTGTGGTCCATACATCCCCACTGCTTGCTCGTTCAGTGAGTGCAGCTGGCCGATTGGGTCCAGACCCTTCTCCAGCCACACATAGTTATGCTCCCCAGTCTTATAGAAATGCCATAATGGGCAACCATGTAGCTCCGAGCAGTGCTGGATATGTTCATCTGAGCACCTCAACTTCAGGCATGAGCCCATCTTCAGCCTTCTCTTTGGCATCTGCTATGGTTTCTTCGCCCATGTTTGTACCACACAACTCTGACAGGTTAGATTCAAATGCTGTTAGATCAAGTTTTCCTTTCGGCATGGTAACCCGAGATGTCTTATCGAATAGTCCCCAGTGGGGGGTAGAGGCTTCACAGAGGGAAGCTGTGAGGAGCATGCATTACAATTCCTCCCTGCTCAATGAAGTTCAAGATTTATACAAGAAGCCAATTCGTGGTTCAACCTCTGAAGCTCTGACAGGGGAGTTCTCAGCTTGTACGTCTGGTCGTCAGCTCCAAGGTTTTGTAGAGGATTTCCCCCACCTAGATATAATCAACGATCTTCTTGATGATGAAAATATTGTTGGGATTTCAGCCAGAGACAACTCAATGTTCCGATCTCTTGGCAATGGACCGAGTCTGTTGAACAGGCAGTTCTCACTCCCTGGTGACATGGGGGTGATGGCTGGTGATGTAGGATCCTCAACAAGCTCTTGCTGCAGGTTTGAGCGGACACGCAGTTATCATGATGGTGGGTTTCAACGGGGATATAGCTCTTCCATAAGCCATTACGAGCCAGCCATGGATTTTATTCCACCATCCACTCAACAACAGCAGCACTTAAATGGCCAGATCGATGGGTTGGTCCCGAACTGGCGACCGGCTTCTGATCTCTCTTTACTTGGGACAAGGGCTTTAGACTTTGATGGTTACCAATATCTCAATGCAGAATACTCAAATATGGCGCAAGGGATCAATGGCTACAATCTTCACCCAAACATAGCTGGTAGAACTCTGCATGAGAGCCCAGCAATGGTGAGAAGAACGGAGCTGAAGCTGAAGCTGCAGTCTCTTCAAAGGGTCAGTGTACCGCCCTCCGGCCCCTCCGGTTGCACCTTCATTCCCGGCACCAACGGCCCCGGCTGTCCCCGGAAAGTGAGGCACTACGCCGTCAACCATTCGACTCAACGTCCAGGCGCTCACTGA 3633 45.44 MAGAVSEEALGMRSVESFANGHHSQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDEEAGTLLSYLGPKPSELYGKHTWKIDKFSQLNKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVLDGFIDADTLIIKAQVQVIRERADRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRSKLGKLIEDKARWSSFRAFWLAIDQNSRRRMSREKTDTILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGHSKSKKGKAKLLDAEEMPTPIVHIEKDTFVLVDDVLLLLERAAVEPLPPKEEKGPQNRTKDGSSGEDFNKDTIERDERRLTELGRRTVEIFVLAHIFSSKVEVAYQEAVALKRQEELIREEEEAWQAESEQKARRLASEKDKKSKKKQAKQKRNNRKGKDKGREEKANLTVLIREQVNPSSGKDEDAIVDKVQPVLEKSDLPEIVSDISDSVEGPGEVLQPDSEDRDASTVNWDTDTSEVHPSTEASSSGIISLSSAQTPLSDKKGLSVMDDSSSTCSTDSVPSVVMNGPYKENSFHNYKKQKSPSIGKNRQKDAAYDRNICANEMDGQSSELTADKEDRSDVCGSNKSKESDPVAINHSLRGKVKRVDQQAVKKEEKVISLPKDRSSKIQVDMERILRDTPAAVPSSPQNHQDHMPPTAEQKLNNQSIATVDPIQIKASSSNSAHQMEKTIPAVTSSHVVSAVKAEGQKSAIPKPTEKASAQQAPMMSRPSSAPLIPGPRATAPVVTVVHTSPLLARSVSAAGRLGPDPSPATHSYAPQSYRNAIMGNHVAPSSAGYVHLSTSTSGMSPSSAFSLASAMVSSPMFVPHNSDRLDSNAVRSSFPFGMVTRDVLSNSPQWGVEASQREAVRSMHYNSSLLNEVQDLYKKPIRGSTSEALTGEFSACTSGRQLQGFVEDFPHLDIINDLLDDENIVGISARDNSMFRSLGNGPSLLNRQFSLPGDMGVMAGDVGSSTSSCCRFERTRSYHDGGFQRGYSSSISHYEPAMDFIPPSTQQQQHLNGQIDGLVPNWRPASDLSLLGTRALDFDGYQYLNAEYSNMAQGINGYNLHPNIAGRTLHESPAMVRRTELKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPRKVRHYAVNHSTQRPGAH 1210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11798217 11808312 - Cp4.1LG03g09940.1 Cpe03g01496 467213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 18 50 - -
Cpe03g01496 1210 SMART math_3 77 181 IPR002083 GO:0005515
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 16 54 - -
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 357 383 - -
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 637 664 - -
Cpe03g01496 1210 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 1140 - -
Cpe03g01496 1210 CDD MATH 76 198 IPR002083 GO:0005515
Cpe03g01496 1210 SUPERFAMILY TRAF domain-like 76 202 - -
Cpe03g01496 1210 Coils Coil 421 441 - -
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 543 595 - -
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 434 498 - -
Cpe03g01496 1210 ProSiteProfiles MATH/TRAF domain profile. 75 197 IPR002083 GO:0005515
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 777 802 - -
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 641 657 - -
Cpe03g01496 1210 Pfam MATH domain 82 199 IPR002083 GO:0005515
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 434 454 - -
Cpe03g01496 1210 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 1140 - -
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 510 624 - -
Cpe03g01496 1210 MobiDBLite consensus disorder prediction 786 800 - -
Cpe03g01496 1210 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 69 204 IPR008974 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01496 - - - cpep:111790110 2163.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01496 Cpe08g00316 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01496 Cpe-Chr3:11798217 Cpe08g00937 Cpe-Chr8:7346446 1.09E-25 dispersed
Cpe08g00316 Cpe-Chr8:1995463 Cpe03g01496 Cpe-Chr3:11798217 1.91E-170 transposed
Cpe03g01496 Cpe-Chr3:11798217 Cpe08g00315 Cpe-Chr8:1994835 2.67E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g630 . . . . . Bpe14g01234 . . . . . Cma14g01788 Car06g01154 Car14g01608 . Cpe08g00316 Cpe03g01496 . . . . . . . . . . . . . . . Cone15ag0145 Cone7ag0302 Cone4ag0302 Lsi05g01689 . . Cme06g00531 Blo02g00618 Blo07g00248 Bda11g00616 Bda13g00083 . Bpe13g00570 Bma02g00802 Bma06g01587 . Cmo06g01350 Cmo14g01824 . . . . . . . . . . . . . Cla05g00474 Cam05g0515 Cec05g0529 Cco05g0529 Clacu05g0516 Cmu05g0490 Cre05g0556 . Csa03g01250 Chy06g00504 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003455 2 0 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01496 Cpe_Chr03 FPKM 4.947544 5.290267 6.226166 6.543904 12.902004 14.879348 12.80363 13.620562 12.576303 11.174146