Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01498 ATGAAACTTTCTCGTCTAAATTCGCTCCGGCGAGTTCAGTCCGGCGAGCTCATCATGAAGTTTCCCGACGATCAAGACGAATCCAAGAGGCCCCAATTCCCTCTCGATTCTAGCTGTTACAAAATCATCGATGAAATTGGGGTCGGCGTCAGCGCCGTCGTTTACAAAGCCATTTGCATTCCCATGAACTCTGCAGTGGTGGCCATCAAAGCCATTGACCTCGATCGATCGCGAGCAGATTTCGATGACATTCGAAGAGAAGCCAAAATTCTGTCACTTCTCTCTCATCCAAACATTCTTAACGCCCACTGTTCGTTCACAGTCGATCGTCGCCTTTGGGTCGTGATGCCGTTCATGTCTGCCGGATCTTTACAGTCGATTATTACGTCGTCGTTTCCAGACGGCTTGCCTGAGCCCTGCATCGCTGTCGTTCTCCGGGAAATTCTACACGCTCTGACTTACCTCCACGACCAAGGCCACCTCCACCGCGACATTAAAGCCGGAAACATTCTGATGGACTCAAATGGGTCCGTCAAGCTAGCTGATTTCGGAGTTTCGGCATCCATTTTCGAGGCCAATTCCACACAGGGGGTGCCAATTTCTCCATCATCGACGTCGATGATGCTGAAGGAAATCGCGGGAACGCCATATTGGATGGCGCCGGAGGTGATTCACTCGCACAATGGGTATAGTTTGAAAGCGGATATATGGTCATTTGGAATCACGGCGTTGGAATTAGCCCACGGACGACCTCCCCTTTCTCATCTCCCACCTTCCAAGTCCCTCCTCCTGAAAATCACGCGAAGGTTTCGATTCTCGGATTACGAGAATCAACAAAACAGCAATAACAAGAACAAATTTTCAAAAGGGTTCAAGGAATTAGTAGCCTCATGCCTTGATCAGGAGCCATCGAGAAGACCATGCGCCGATAAATTGCTCAAACATCCCTTTTTCAGGAACTGCAAGGGCCCTGATCTTCTCATAAAGACTGTATTACAAGGTTTGCCGAGTGTCGAAGAGAGATTCAAATTGGGAAAATTGCAGCGATTACCATCGATGAAAACGGAGGAAGAAGATGAAGAGGAAATAGAGAAGGAAATTATAAAACAGAGGAGGATCAGCGGGTGGAATTTCAAGGAGGATGGGCTAGAGCTGGAGCCTGTTTTTCCAGGGGAAAACTGCGAGGAAGATGAATGTTCGATCATAAAACAGGTCCGATTCGGTGGGGAATCGATCATGGAGAAGGGTTCGAGGGATTCGAGTGAGTGCTGTTCGGGGGTATCGGATCTGAGTTCACCAACGGGGAACGGGAGGAGAGGCGAAGTGGAGGAGGAGGAGGAGGAGGGTGTTGACAGGGAGTCGATAATGGGTGGATTGGTGGCGCTGAAAAGGAGCTTGGACGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATAGAAGGAGAGAAAGGGGGAGAGATGAGCCGAGAGGAGCAGATAGGGAGATTGATGGAGAAGATGACGAGGGAATTGGAGAATGAGCGGAAGAGGAACTTTGAATTGGAGATGGAGTTGGAATTTCTTAGGCTTCAGATCTCCGCTGCCCATAATACTGGCGCTGCTTAA 1608 49.56 MKLSRLNSLRRVQSGELIMKFPDDQDESKRPQFPLDSSCYKIIDEIGVGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILHALTYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEANSTQGVPISPSSTSMMLKEIAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENQQNSNNKNKFSKGFKELVASCLDQEPSRRPCADKLLKHPFFRNCKGPDLLIKTVLQGLPSVEERFKLGKLQRLPSMKTEEEDEEEIEKEIIKQRRISGWNFKEDGLELEPVFPGENCEEDECSIIKQVRFGGESIMEKGSRDSSECCSGVSDLSSPTGNGRRGEVEEEEEEGVDRESIMGGLVALKRSLDEQRRAVGSLIELIEGEKGGEMSREEQIGRLMEKMTRELENERKRNFELEMELEFLRLQISAAHNTGAA 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11812109 11813716 + Cp4.1LG03g10100.1 Cpe03g01498 467215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01498 535 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 24 532 - -
Cpe03g01498 535 SMART serkin_6 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01498 535 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01498 535 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Cpe03g01498 535 Coils Coil 491 525 - -
Cpe03g01498 535 Gene3D Transferase(Phosphotransferase) domain 1 122 370 - -
Cpe03g01498 535 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01498 535 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Cpe03g01498 535 Coils Coil 353 373 - -
Cpe03g01498 535 MobiDBLite consensus disorder prediction 421 435 - -
Cpe03g01498 535 Gene3D Phosphorylase Kinase; domain 1 28 118 - -
Cpe03g01498 535 MobiDBLite consensus disorder prediction 414 452 - -
Cpe03g01498 535 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 24 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01498 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101215648 846.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01498 Cpe-Chr3:11812109 Cpe13g00900 Cpe-Chr13:7689434 8.76E-86 dispersed
Cpe03g01498 Cpe-Chr3:11812109 Cpe08g00913 Cpe-Chr8:7182865 1.57E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g641 . . . . . . . . . . . Cma14g01789 . Car14g01610 . . Cpe03g01498 . . . . . . . Cla06g00643 Cam06g0688 Cec06g0690 Cco06g0697 Clacu06g0674 Cmu06g0665 Cre06g1433 . . . Cone4ag0304 Lsi05g01693 . Chy05g00345 Cme06g00521 . . . . . . . . . . Cmo14g01826 . . . Car17g00157 . . . . . . . . . Cla05g00470 Cam05g0511 Cec05g0525 Cco05g0526 Clacu05g0512 Cmu05g0488 Cre05g0552 Lsi09g01255 Csa03g01242 Chy06g00495 Cme05g00538
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g00678 CST 1 711 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 1.4e-213 740.0
Cpe02g00695 CST 1 656 MAP Kinase Kinase Kinase Kinase AT1G53165 53.8 6.5e-187 651.4
Cpe06g00678 CST 1 710 MAP Kinase Kinase Kinase Kinase AT3G15220 60.9 2.0e-220 762.7
Cpe02g00695 CST 1 655 MAP Kinase Kinase Kinase Kinase AT3G15220 55.3 3.4e-191 665.6
Cpe09g00224 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.4e-67 255.0
Cpe09g00224 . 4 857 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 9.2e-241 830.5
Cpe06g00678 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 9.4e-68 255.8
Cpe13g00900 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 59.7 2.9e-216 748.8
Cpe01g02349 CCT,ECH 1 623 MAP Kinase Kinase Kinase Kinase AT5G14720 58.0 6.3e-211 731.1
Cpe08g00913 CCT 7 745 MAP Kinase Kinase Kinase Kinase AT4G24100 62.3 2.4e-240 828.9
Cpe14g01014 CCT 7 844 MAP Kinase Kinase Kinase Kinase AT4G24100 51.9 1.2e-210 730.3
Cpe08g00913 CCT 11 746 MAP Kinase Kinase Kinase Kinase AT4G10730 62.0 4.8e-238 821.2
Cpe14g01014 CCT 11 844 MAP Kinase Kinase Kinase Kinase AT4G10730 52.4 6.3e-214 741.1
Cpe08g00913 CCT 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.4e-116 417.5
Cpe14g01014 CCT 226 507 MAP Kinase Kinase Kinase Kinase AT1G70430 59.4 1.0e-95 348.2
Cpe13g00900 CCT,ECH 1 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 6.4e-80 295.4
Cpe01g02349 CCT,ECH 6 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 3.0e-77 286.6
Cpe08g00913 CCT 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.9e-74 275.0
Cpe03g01498 . 32 509 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.8e-144 509.2
Cpe13g00900 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 8.7e-69 258.5
Cpe01g02349 CCT,ECH 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 1.4e-66 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62310 PF00069 Pkinase 7.70E-59 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01498 Cpe_Chr03 FPKM 1.616667 0.500239 0.0 1.410046 1.916779 3.472731 0.0 0.794348 0.602819 0.0