Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01499 ATGGAGAGGAACTGTCTACGCACTGCCTGTCGTACGAGTTTAACAACAATGAACACCACCATCAGCAGCGGAGGAGGAGCAGCAGCAACAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACCCAACGGGGTAGGGAAAAGCCAGAGAAACAAGGTGTGCAGGGCAGCGGCGGCGGCAGAGGAGGATTTCATAAATGGGATTTCATGGCCACCAAGAAGTTACACGTGCAACTTCTGCAAAAGGGAATTTAGATCGGCTCAAGCACTTGGCGGCCACATGAATGTCCATCGTAGAGATAGAGCCTTACTCTACTCTCCCCCTGCTGATCATACCCACTTCACAAATCTCAACCTTAACCTTCACCATAACCCTTTCCCTAATCGCCCCTTCAAAGCCTTGGAGATTGCCAAACCTAATAGGAACAAGCCCCACAAATTCATTGGTTTGGACATTGAAATCAGCACTACCAATAACACTGCCACCCTACTTACTGAATCCAAGAAGAAGGACATTGATTTGGAGCTTCGATTAGGGTACTCGACTTAG 549 49.54 MERNCLRTACRTSLTTMNTTISSGGGAAATAGGGGGGGGGGPNGVGKSQRNKVCRAAAAAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADHTHFTNLNLNLHHNPFPNRPFKALEIAKPNRNKPHKFIGLDIEISTTNNTATLLTESKKKDIDLELRLGYST 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11814415 11814963 + Cp4.1LG03g10150.1 Cpe03g01499 467216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01499 182 Gene3D Classic Zinc Finger 68 113 - -
Cpe03g01499 182 Pfam C2H2-type zinc finger 75 99 - -
Cpe03g01499 182 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Cpe03g01499 182 PANTHER OS07G0101800 PROTEIN 56 131 - -
Cpe03g01499 182 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 56 131 - -
Cpe03g01499 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Cpe03g01499 182 SMART c2h2final6 75 97 IPR013087 -
Cpe03g01499 182 SUPERFAMILY beta-beta-alpha zinc fingers 72 102 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01499 - - - csv:101215415 198.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01499 Cpe-Chr3:11814415 Cpe05g00184 Cpe-Chr5:969896 1.21E-20 dispersed
Cpe15g00065 Cpe-Chr15:466664 Cpe03g01499 Cpe-Chr3:11814415 1.50E-17 wgd
Cpe17g00181 Cpe-Chr17:1172882 Cpe03g01499 Cpe-Chr3:11814415 2.85E-18 wgd
Cpe03g01499 Cpe-Chr3:11814415 Cpe05g00052 Cpe-Chr5:267678 1.49E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g643 . . . . . . . . . . . . . Car14g01611 . . Cpe03g01499 . . . . . . . . . . . . . . . . . . Lsi05g01694 . . . . . . . . . . . . . Cmo14g01827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012411 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49268 PF13912 zf-C2H2_6 5.30E-07 CL0361 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g01499 Cpe_Chr03 FPKM 0.774603 0.0 0.0 1.262391 0.0 3.136149 2.505964 2.883743 1.159396 1.69459