Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01502 ATGTGTATTCTGGCGAATCCTTGGTGGACAACGCAGGTGGGGCTGTCGGGAGTGGATCATCATCACCCCACAGCAATCAACTCGCCCATTTACAAACAAAGCGATGAAAACAGCGGCGGTGGAAGCGGCAGTCGAGACGACGACGACGAAGACGACAACAACCGTGACGAGCTTACAGAAGGGGCGGTCGAGGCTGGAACTCGAAGGCCAAGAGGTCGTCCACCTGGATCTAAGAACAAACCCAAACCGCCTATCTTCGTCACGCGTGACAGTCCCAACGCCCTAAGAAGCTACGTCCTAGAGGTCGCTGCGGGGTCTGACGTGGCGGATTCCATCGCTCAATTCGCCCGTAAACGCCAGCGTGGCGTCTGTGTTCTCAGTGCAACGGGTTTGGTTGCTAACGTCACTTTGCGTCAGCCCGCTGCCCCTGGCTCCGTAATGCCACTCCAAGGAAGGTTCGAGATTCTTTCTTTAACCGGCGCGTTTTTACCTGGTCCGGCCCCACCTGGGTCCACTGGCCTGACCGTTTACTTGTCCGGCGGTCAAGGGCAGGTTGTCGGCGGTAGCGTCGTTGGGTCGCTTGTAGCTGCTGGACCCATTATGGTAATTGCTGCTACTTTTGCTAATGCGACATATGAAAGGTTGCCTCTTGAAGATCCCGACGACCATGAAGTTGGCAGTGGCTCCGCTTCACACGGCGGTGCGAGAAGCCCACCGCCGGAAATTAGAGGCAGTGGAGGAGGGCAGATGGGAAGTGGGATGCCGGAACCGACTTTGCCGCTCTATAATTTACTTCCGGATATGATGCCCAACGGAGTTCAGCTTGGGCACGACGGGTACGCTTATGTCCGGCCACCCTATTGA 864 56.6 MCILANPWWTTQVGLSGVDHHHPTAINSPIYKQSDENSGGGSGSRDDDDEDDNNRDELTEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDDHEVGSGSASHGGARSPPPEIRGSGGGQMGSGMPEPTLPLYNLLPDMMPNGVQLGHDGYAYVRPPY 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11828854 11830471 - Cp4.1LG03g09930.1 Cpe03g01502 467219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01502 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 287 IPR014476 GO:0003680
Cpe03g01502 287 Gene3D - 95 224 - -
Cpe03g01502 287 MobiDBLite consensus disorder prediction 218 259 - -
Cpe03g01502 287 MobiDBLite consensus disorder prediction 24 89 - -
Cpe03g01502 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 39 287 - -
Cpe03g01502 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 208 IPR005175 -
Cpe03g01502 287 ProSiteProfiles PPC domain profile profile. 92 233 IPR005175 -
Cpe03g01502 287 PIRSF ESCAROLA 12 286 IPR014476 GO:0003680
Cpe03g01502 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 220 - -
Cpe03g01502 287 CDD DUF296 96 178 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00169 Cpe-Chr1:954469 Cpe03g01502 Cpe-Chr3:11828854 4.75E-73 dispersed
Cpe01g01079 Cpe-Chr1:6366461 Cpe03g01502 Cpe-Chr3:11828854 1.26E-73 dispersed
Cpe03g01502 Cpe-Chr3:11828854 Cpe07g00977 Cpe-Chr7:8822495 1.49E-74 dispersed
Cpe13g01102 Cpe-Chr13:8883391 Cpe03g01502 Cpe-Chr3:11828854 3.56E-59 dispersed
Cpe11g01009 Cpe-Chr11:8519080 Cpe03g01502 Cpe-Chr3:11828854 4.30E-44 wgd
Cpe12g00151 Cpe-Chr12:965802 Cpe03g01502 Cpe-Chr3:11828854 4.42E-68 wgd
Cpe03g01502 Cpe-Chr3:11828854 Cpe08g00320 Cpe-Chr8:2023409 2.45E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01502 - - cpep:111790297 484.182