Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01514 ATGGATTACGCCGGATTCTTCTCCTCTGTTTCCGACTTCTCCTCGGAAGCCTCCTTCGGCTCGCCGGAATCCTGTAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTTTGGGCTGATCTCCGAGGGCACACGGGAATCCTCCGACCCCAGTATCGGAGCGGTGCGAGTGAAGGAAGAGGAGGTCGATTCTGTCGGCGAAGATACCCGGAAGAAGGAAAGGCCTTATAGAGGGGTTCGCCGCCGGCCATGGGGTAAATTCGCGGCGGAAATTAGAGATTCCACTAGACATGGGATAAGGGTATGGTTGGGGACTTTTGACAGTGCGGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCGTTTTCGATGAGGGGTGCTGCCGCAATTCTAAATTTTCCCGTGGACAGAGTAAGGGAGTCCCTTAAAGAAATGAACTTCGGCGGAGGCGAGGCTGCTGATAGTATCACCGACGTCGGCGGGTCTCCGGTAATAGCGTTGAAAAGAAAACACTCGATCAGAAGGAAAGCCATTAGCAAAAAGAACAAAGAGAGGGATTTGAGGATCCAAAATGTGATGGTTTTGGAAGATTTAGGCGCAGAGTATTTGGAAGAACTTCTGGGCTCTTCTCAAAATAGCATCCCCTGTTCTTTCTAA 666 50.6 MDYAGFFSSVSDFSSEASFGSPESCNFLPFNENDSEEMLLFGLISEGTRESSDPSIGAVRVKEEEVDSVGEDTRKKERPYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNFGGGEAADSITDVGGSPVIALKRKHSIRRKAISKKNKERDLRIQNVMVLEDLGAEYLEELLGSSQNSIPCSF 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11864606 11865271 + Cp4.1LG03g10110.1 Cpe03g01514 467231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01514 221 PANTHER DNA-BINDING DOMAIN 21 212 IPR044808 GO:0003700|GO:0009873
Cpe03g01514 221 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Cpe03g01514 221 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Cpe03g01514 221 CDD AP2 80 139 IPR001471 GO:0003700|GO:0006355
Cpe03g01514 221 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Cpe03g01514 221 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Cpe03g01514 221 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Cpe03g01514 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 21 212 - -
Cpe03g01514 221 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
Cpe03g01514 221 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01514 Cpe-Chr3:11864606 Cpe12g00144 Cpe-Chr12:921633 6.04E-77 dispersed
Cpe17g00891 Cpe-Chr17:6936608 Cpe03g01514 Cpe-Chr3:11864606 2.60E-12 dispersed
Cpe03g01512 Cpe-Chr3:11858223 Cpe03g01514 Cpe-Chr3:11864606 7.66E-23 proximal
Cpe03g01514 Cpe-Chr3:11864606 Cpe05g00060 Cpe-Chr5:304277 1.11E-09 wgd
Cpe03g01514 Cpe-Chr3:11864606 Cpe08g00330 Cpe-Chr8:2066456 8.17E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49271 PF00847 AP2 1.40E-14 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01514 K14516 - csv:101210326 342.043