Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01531 ATGAGAGCAAAGGCCTGGATTAACCAACAAATTTTTGGATTCAAGAGTAAATTCAGGAAGATGATAAATTGTATTCGTTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCAACTCGAGATTATTCAGCTAGTGGCTTTTCATCCCGAACGGGTGAGGTGGAACCAAAGGTGGATAATGTCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATCTGAATTATGAGGAAGCACGAGCTTTACTAGGAAGGCTGGAGTATCAAAAGGAAGGCTTACCTGAAAACTTTGCTATTGATTGTAAATTGCAAGAGACACTAACGAAGGCTGTTGAATTACTTCCAGAATTGTGGAAATCTGCCGGGTCTCCAGAAGAATCAATCTTGTCATATAGGCGTGCCCTCCTCTATCAATGGAATCTGGAAATGGAAACCAGAGCAAAAATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTCACAGATGGAAAGCTCATTCGTGCCAAGAAGTAATATGGAAGAGGCCATTCTTCTTTTAATGGTTCTGATGAGAAAATATGTACTTGGATTGATTGTATGGGACCCCTCAATAATAGAGCATCTCTCGTTTGCACTGTCTGTTTCAGGGGAATTTGGTGCTCTAGCTAATGAGGTTGAACAATTGCCTCCAGGAATTATAAGCAGAAAAGAAAAATACTGCACCTTAGCTCTTTGTTACTATGGGGAAGGTAAAAGCTTAGTTGCGTTGAATCTTTTGAAGAACTTCTTGAGTAACATAGAGAATGTAGACTGTCTACTGGAATTGTTGCTGGCTTCAAAGCTCTGTGGGGAAAATTTGGTCTGTCTTGATGAGGGGGTGACATACATATTGAGAGTGCTTTCGGAGCTGCGTGGTAAATGCATTCAGATGGCTTCGGTGGCTAATTGTTTACTTGGCGTGCTGTTGTCGGTTATGTCCAAATTCGTCGCTTCCGATTCTCAGAAAGCTCTGAAACAGTCTGAAGCGCTCAAGGCGCTACAAACTGCTGAGCAGCTGATGAGACAAAGAGATCCATTCATTGTTTATCATCTTTGTCTTGAATATGCTGAACAAAGGAAGCTGGATATGGCTCTATACTATGCAAAACAGTTAGTGAACCTCGAGGTTGGCTCTAGTCTGAAGTCTTACTTACTCTTGGCCAGAATATTGTCCGCCCAGCAACGATTTGTCGATGCAGAGACTGTACTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTTTTACGAACTAAAGCTAAGCTCCAGATAGCACAGGGCCAGTTAAAGAATGGCATAGAAACATATACTCAACTTCTTGCTATAATTCAAGTTCAGACCAAAAGTAGTGGGGTTGGAAAGATGCTTTCAAAGGATGTGAGAAAATCTGAGAGAAGTCTGGAAATTGATACATGGCATGACTTGGCCAATATCTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATATGTCTATCAAAATTGCAGAAAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTACTGTATGAGTCGAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCCACTGCCAGTCTTCTCCAACAGCTAGGTGGGAGGCAGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGACGCCCTTCGACTTGATCGAGCAAACCCTTCTGCTTGGTACAGTCTCGGGCTGCTGTATAAAGCTGATGTTGGGGCATCTGCGCTGGAGGTTGCTGAATGCTTTGAGGCTGCATCTCTGCTTGAAGAGTCAGCACCGGTTGAACCTTTCAGATGA 1932 43.22 MRAKAWINQQIFGFKSKFRKMINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEPKVDNVNIEEAESSLRESGYLNYEEARALLGRLEYQKEGLPENFAIDCKLQETLTKAVELLPELWKSAGSPEESILSYRRALLYQWNLEMETRAKIEKEFAIFLLYSGCDASPPNLRSQMESSFVPRSNMEEAILLLMVLMRKYVLGLIVWDPSIIEHLSFALSVSGEFGALANEVEQLPPGIISRKEKYCTLALCYYGEGKSLVALNLLKNFLSNIENVDCLLELLLASKLCGENLVCLDEGVTYILRVLSELRGKCIQMASVANCLLGVLLSVMSKFVASDSQKALKQSEALKALQTAEQLMRQRDPFIVYHLCLEYAEQRKLDMALYYAKQLVNLEVGSSLKSYLLLARILSAQQRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYTQLLAIIQVQTKSSGVGKMLSKDVRKSERSLEIDTWHDLANIYTSLSQWRDAEICLSKLQKINPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTASLLQQLGGRQSFPVVRSLLTDALRLDRANPSAWYSLGLLYKADVGASALEVAECFEAASLLEESAPVEPFR 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11950278 11954490 + Cp4.1LG03g09880.1 Cpe03g01531 467248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01531 643 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Cpe03g01531 643 SUPERFAMILY TPR-like 442 613 IPR011990 GO:0005515
Cpe03g01531 643 PANTHER OS10G0471400 PROTEIN 13 98 - -
Cpe03g01531 643 PANTHER OS10G0471400 PROTEIN 99 643 - -
Cpe03g01531 643 Gene3D Tetratricopeptide repeat domain 485 638 IPR011990 GO:0005515
Cpe03g01531 643 Gene3D Tetratricopeptide repeat domain 232 484 IPR011990 GO:0005515
Cpe03g01531 643 PANTHER PROTEIN NPG1 13 98 IPR043376 -
Cpe03g01531 643 PANTHER PROTEIN NPG1 99 643 IPR043376 -
Cpe03g01531 643 Pfam Tetratricopeptide repeat 538 563 IPR019734 GO:0005515
Cpe03g01531 643 SUPERFAMILY TPR-like 350 470 IPR011990 GO:0005515
Cpe03g01531 643 SMART tpr_5 497 530 IPR019734 GO:0005515
Cpe03g01531 643 SMART tpr_5 441 474 IPR019734 GO:0005515
Cpe03g01531 643 SMART tpr_5 531 564 IPR019734 GO:0005515
Cpe03g01531 643 SMART tpr_5 405 438 IPR019734 GO:0005515
Cpe03g01531 643 ProSiteProfiles TPR repeat profile. 531 564 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01531 K21843 TTC7; tetratricopeptide repeat protein 7 - csv:101206105 976.081
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01531 Cpe08g00348 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01531 Cpe-Chr3:11950278 Cpe06g00565 Cpe-Chr6:3416728 5.69E-12 dispersed
Cpe15g00093 Cpe-Chr15:703413 Cpe03g01531 Cpe-Chr3:11950278 3.82E-18 wgd
Cpe03g01531 Cpe-Chr3:11950278 Cpe05g00076 Cpe-Chr5:372927 2.06E-16 wgd
Cpe03g01531 Cpe-Chr3:11950278 Cpe08g00348 Cpe-Chr8:2168722 4.28E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g747 . . . . . Bpe14g01270 . . . . Cma06g01307 Cma14g01828 Car06g01121 Car14g01640 . Cpe08g00348 Cpe03g01531 . . . . . . . . . . . . . . . . . Cone4ag0348 Lsi05g01751 . . Cme06g00471 Blo02g00760 Blo07g00276 . Bda13g00048 . Bpe13g00544 Bma02g00760 Bma06g01610 . Cmo06g01314 Cmo14g01869 . . . . . . . . . . . . . Cla05g00427 Cam05g0465 Cec05g0474 Cco05g0474 Clacu05g0461 Cmu05g0441 Cre05g0502 . Csa03g01189 Chy06g00453 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003752 1 7 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 4 1 46