Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01537 ATGGGCGGCGATTCTAGGGCTGTTAATGGCTACGATGAGAGGTCTGTGGACTCTGCGGCGGCGGGAGAAGTTGGCGATCATAGAAACGGCGAAGATGACAGTGAATCGAATGCTCTATTGCCGCCGCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGACAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGCGACGTGAGCGATTCCGGGGACGAGGAGTCTGATTCTTGCAGCTGTATGATTATGTAG 288 52.78 MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11984244 11986016 - Cp4.1LG03g09710.1 Cpe03g01537 467254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01537 95 MobiDBLite consensus disorder prediction 58 73 - -
Cpe03g01537 95 PANTHER LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC 11 95 - -
Cpe03g01537 95 PANTHER OS03G0138400 PROTEIN 11 95 - -
Cpe03g01537 95 MobiDBLite consensus disorder prediction 19 38 - -
Cpe03g01537 95 MobiDBLite consensus disorder prediction 1 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01537 - - - csv:101205158 155.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01537 Cpe-Chr3:11984244 Cpe06g00955 Cpe-Chr6:8170091 4.10E-06 dispersed
Cpe03g01537 Cpe-Chr3:11984244 Cpe08g00352 Cpe-Chr8:2189922 3.40E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g767 . . . . . . . . . . . Cma14g01836 . Car14g01644 . . Cpe03g01537 Bhi01g00111 . . . . . . . . . . . . . . . . . Lsi05g01761 . . . . . Bda11g00645 . . Bpe13g00541 . . . . . . . . . . . . . . . . . . Cla05g00418 Cam05g0456 Cec05g0463 Cco05g0465 Clacu05g0453 Cmu05g0431 Cre05g0492 . . Chy06g00442 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003341 2 1 2 2 1 1 2 1 1 1 1 1 1 0 1 2 1 2 2 1 1 2 2 1 2 1 2 3 4 1 45