Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01541 ATGAACTGCTCCATTTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGACTACTCTTCGAGAAGCGTTTAATCGAGAGGCACATTTCTGACTATGGGAAATGCCCTGTTACTGGTGAACCGCTTTCCATCGATGACATGGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTAGTGCTGTCCAATTTTGCGTTAGAGCAACAGCTGCATACAGCTAGACAGGAGCTTAGTCACGCCTTGTATCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAAAAGGAACGCGATGAGGCTAGGTCATTACTTGCTCAGGCCGAGAGGCAGATGCCGTTGTCATCAACTCCAGTTTCATCTAATGCTGCTGTCAGTGTTAATGGGAAAAGAGTTAATGAGGATGAAGAATTGGGTCCTGATGGCAAGAAGATACGTCGAGGAATATCTGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTGCTCTATCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTCTAGAAAGTTACACCCAGATTTCTAGCCATCCACTTCATAAAACAAGCAAACCAGGCATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTATTTTTGACAGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTGGCCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTTCGTGTGTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCATACAGCTGAGGTCCAAGCGGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCAGGATTATGCCTGACCCAGGTTACAGAGGCTTCAGAAACGGAGGGCTACACATCTGCAGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCAGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAGATTTGATGGACACGTTGGGCCAGTAACTGCAATATCTTTTTCTGAAAACGGCTACTTCCTAGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGATCTTCGAAAATTGAAGAACTTTCGTACATTTTCACCTTATGATTCAGAAACTCCAACAAACTCTGGTACGTTTCTTTCTGTAGTGGAATTTGATCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGATTTAAGGGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTGTCTGGCACAGGTAAAGCAACTTGTCTCAAATTTGGTCCAGATGCAAAATACTTGGCAGTTGGGTCCATGGATCGAAATCTTCGAATTTTCGGTGTGCCTGGGGAAGATGGCTCGATGGAAGCATAA 1584 44.0 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLSIDDMVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTPVSSNAAVSVNGKRVNEDEELGPDGKKIRRGISATVISELTDCNAALSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVIFDRSSGEILSTLSGHSKKVTSVKFVARDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVTEASETEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSETPTNSGTFLSVVEFDHSGSYLAIAGSDLRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGSMEA 527
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 12003005 12010951 + Cp4.1LG03g09670.1 Cpe03g01541 467258
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01541 527 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 526 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Cpe03g01541 527 SUPERFAMILY RING/U-box 1 53 - -
Cpe03g01541 527 SMART WD40_4 476 517 IPR001680 GO:0005515
Cpe03g01541 527 SMART WD40_4 207 249 IPR001680 GO:0005515
Cpe03g01541 527 SMART WD40_4 252 291 IPR001680 GO:0005515
Cpe03g01541 527 SMART WD40_4 297 336 IPR001680 GO:0005515
Cpe03g01541 527 SMART WD40_4 424 469 IPR001680 GO:0005515
Cpe03g01541 527 SMART WD40_4 383 421 IPR001680 GO:0005515
Cpe03g01541 527 SMART WD40_4 339 380 IPR001680 GO:0005515
Cpe03g01541 527 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Cpe03g01541 527 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Cpe03g01541 527 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515
Cpe03g01541 527 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515
Cpe03g01541 527 Gene3D - 199 518 IPR015943 GO:0005515
Cpe03g01541 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515
Cpe03g01541 527 SUPERFAMILY WD40 repeat-like 220 516 IPR036322 GO:0005515
Cpe03g01541 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Cpe03g01541 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Cpe03g01541 527 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Cpe03g01541 527 MobiDBLite consensus disorder prediction 134 165 - -
Cpe03g01541 527 MobiDBLite consensus disorder prediction 134 150 - -
Cpe03g01541 527 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Cpe03g01541 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Cpe03g01541 527 CDD WD40 223 516 - -
Cpe03g01541 527 CDD RING-Ubox_PRP19 3 54 - -
Cpe03g01541 527 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Cpe03g01541 527 Coils Coil 113 133 - -
Cpe03g01541 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe03g01541 Cpe08g00356 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01541 Cpe-Chr3:12003005 Cpe20g00414 Cpe-Chr20:2366880 5.76E-06 dispersed
Cpe03g01541 Cpe-Chr3:12003005 Cpe08g00356 Cpe-Chr8:2206858 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01541 K10599 - csv:101204424 978.778