Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01542 ATGTTCGCCTTCAAAGAGAAAGTTACGGAGAGCCTTTCCCGTCTTTTAGCCGATTCCCCAGATTCCGCTTCTCATTCCTTAACTTCACTTGACGACGATCCTTCTCCCTTCTGTTTTGTTCTTGCGTTGGTACTGATTGAGATTGACATGTCAAGGGTTGGAGTTTTGGGTCTATGGGAAACTTTTGGCATTCGATTTAACTTGGTTGTCAGGTCATTCTCTAAAGGAGGAAAGGCTTTGTCTTCCTACTTTTCCTATATTATCCCATTCGCAGGCTTTGAAGGACCCAAATCAGGCCAACCCCAGAACCATTACAGGCCACAACAGCCTCGCCCTGTGCCATATGATCCTGTCAATTTTGATCCTCTAGAACCTTTGGACGACGAGTATAGCACAGCTTGTGGAACTAAGGGAACCTCAATTTTTGAGGTAGAAAATAAGGAATGCAGTCGAGACAATGAGGAAGATTTTGATGACTCTTTCTCCGGAAGGAGTACTAATAGTTCTGAAGTATTTGAAGACGTAGCTCGCCGACCTAGTCCGGAGAAGTCTGTGCAAAATTCTTCGGTTGATTCTGTTCTAATGTCCATTGACACCTATGGTTTCCTGGAGATGGTAGGGATGCATTATGACCTTAACTTGAGTTTCTTTCTAATGAAGGGCAGTACATTGAGACATGGCATATCTCTCCGAACGCTCATCCGCAAGAGTAGTGAACTTTCTGGTCCTTGTTTGCTGGTTGTTGGCGATCGACAAGGTGCCGTGTTTGGTGGTCTTCTAGATTCTCCATTGAAGCCTACTGCTAAGAGAAAATATCAAGGAACAAATCAAACTTTCGTCTTTACCACCATGTATGGTGAACCACAGCTCTTCAGACCAACTGGAGCGAACCGCTATTTCTACATGTGTATGGATGATTTACTAGCACTTGGTGGTGGCAGTAACTTCGCATTACGTCTGGAAGAAGATCTGTTGAATGGAACCAGTGGACCATGTGAGACGTTTGGTAACTCGTGCTTAGCGCACAGCCAGGAGTTTGAGTTGAAGAATGTTGAGCTATGGGGTTTTGCTCATGCTTCGCAATATCTTTCATGA 1095 44.47 MFAFKEKVTESLSRLLADSPDSASHSLTSLDDDPSPFCFVLALVLIEIDMSRVGVLGLWETFGIRFNLVVRSFSKGGKALSSYFSYIIPFAGFEGPKSGQPQNHYRPQQPRPVPYDPVNFDPLEPLDDEYSTACGTKGTSIFEVENKECSRDNEEDFDDSFSGRSTNSSEVFEDVARRPSPEKSVQNSSVDSVLMSIDTYGFLEMVGMHYDLNLSFFLMKGSTLRHGISLRTLIRKSSELSGPCLLVVGDRQGAVFGGLLDSPLKPTAKRKYQGTNQTFVFTTMYGEPQLFRPTGANRYFYMCMDDLLALGGGSNFALRLEEDLLNGTSGPCETFGNSCLAHSQEFELKNVELWGFAHASQYLS 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12010073 12013382 - Cp4.1LG03g09590.1 Cpe03g01542 467259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01542 364 ProSiteProfiles TLDc domain profile. 193 357 IPR006571 -
Cpe03g01542 364 Pfam TLD 222 356 IPR006571 -
Cpe03g01542 364 PANTHER TLD-DOMAIN CONTAINING NUCLEOLAR PROTEIN 71 363 - -
Cpe03g01542 364 MobiDBLite consensus disorder prediction 150 188 - -
Cpe03g01542 364 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 71 363 - -
Cpe03g01542 364 SMART 109ultra 188 357 IPR006571 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01542 - - - bhj:120081029 473.396
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01542 Cpe12g00120 CCT
Cpe03g01542 Cpe17g00216 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01542 Cpe-Chr3:12010073 Cpe14g00616 Cpe-Chr14:3905472 1.09E-60 dispersed
Cpe12g00120 Cpe-Chr12:757897 Cpe03g01542 Cpe-Chr3:12010073 4.31E-69 wgd
Cpe17g00216 Cpe-Chr17:1384154 Cpe03g01542 Cpe-Chr3:12010073 9.21E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g779 Blo01g00303 . Bda03g01096 . Bpe04g00984 . Bma04g01021 Bma05g01254 Cmo08g01030 Cmo17g00140 . Cma14g01842 . Car14g01650 Sed02g0476 . Cpe03g01542 Bhi01g00679 Tan10g0633 Cmetu04g0781 . Hepe05g1689 . Lcy11g1703 Cla06g00697 Cam06g0747 Cec06g0754 Cco06g0765 Clacu06g0738 Cmu06g0722 Cre06g1498 . . . . Lsi05g01767 Csa02g01028 . Cme06g00454 . . . . Bpe05g01110 . . . Sed05g0763 . Cmo14g01884 Cma08g01060 Cma17g00141 Car08g00936 Car17g00123 Cpe12g00120 Cpe17g00216 Bhi12g01562 Tan06g2370 Cmetu05g0428 Lac12g2121 . . Lcy13g0409 Cla05g00412 Cam05g0450 Cec05g0457 Cco05g0458 Clacu05g0447 Cmu05g0424 Cre05g0487 Lsi09g01196 Csa03g01173 Chy06g00435 Cme05g00618
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002356 1 3 1 2 2 2 4 2 2 1 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 1 3 2 1 62