Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01546 ATGTTGCACTCCACGGCTTCGTTTTCCATCTACACTGATGATGAAAATCAAGAACAAGTCATGGGATTAGAAGGATTTGAGAAGGGTATCACGATTGAAGTGAACAAAGAAGCTGTGGGTAGTGGTAATGATTTCTGTTTTTCGAAAGGGGCTATGGGGTTGATTCAAGAGGAAGAAATGGAAGATGATGATGGCATGAACTCGATTGGGGGTTTTGATGGCGGCGAGTTTGACCTCACACCGGCCAGTCCTCCGATGTATCTAGCGGCAGGACTTGGATTGGATGCTTCTGGTCTCGGCGGTGCGTATGATTCTATGGATTTTTTTGACGAGAAGATGGTGGATGAACCGCCCGCAGTCCATCCTTCGCTGCTTCTAAGGAAATATGTGCAGTCCTTATGGTCGGAGGGAAAGCTTGATGAAGCTGAGGAACAGTGCTATCAAGCTACAGTAACATACCCTGAAGATGCTGAAATTCTGATGCTGTATGCTCAGTTGGTTTGGGAAGTTCATCATGATCAAGCAAAAGCCTCAAGTTACTTTGAACGTGCAGCTCTTGTTGCTCCAGATAACAGCGATATTCTTGCAGCACGAGCTAGATTCCTGTGGGAACTGGACGACGAGGATGAAACTATGGTACCGGGGGAAGAAGACGGGAACCCAATTGGTAGTTCACCGCCCAAAGAAAGAACTGAACCAGTAGCTGACAATGGTGGGAGTGATCTGCAGGAGTCTTATGAGAAGATGTTGAAGGAGAACCCCACTGATCCATTGCTTCTGAAGAACTATGCTCGGTTCTTGCAACAGTCCAAAGCAGATCTCCAAGGAGCAGAGGAATACTACCACCGTGCCATACAAGCCGACCCAAGCGACGGGGAAGTGTTAGCACAATATGCAAAATTGGTGTGGGAGCTTCATCACGACTACGATAAAGCGTCACATAACTTCGAGAGAGCAGTAGAAGCCTCTCCTACAAACAGCTATGTTCTTGGAGCATATGCAAGCTTCCTTTGGGAGACGGATGAATACCAAGAGGAAGATAGCCAAAATGACTCTCAGTGGCCTTCAAACACAGCGACAGTTTGTGTGGGAAATGCTTGA 1101 47.05 MLHSTASFSIYTDDENQEQVMGLEGFEKGITIEVNKEAVGSGNDFCFSKGAMGLIQEEEMEDDDGMNSIGGFDGGEFDLTPASPPMYLAAGLGLDASGLGGAYDSMDFFDEKMVDEPPAVHPSLLLRKYVQSLWSEGKLDEAEEQCYQATVTYPEDAEILMLYAQLVWEVHHDQAKASSYFERAALVAPDNSDILAARARFLWELDDEDETMVPGEEDGNPIGSSPPKERTEPVADNGGSDLQESYEKMLKENPTDPLLLKNYARFLQQSKADLQGAEEYYHRAIQADPSDGEVLAQYAKLVWELHHDYDKASHNFERAVEASPTNSYVLGAYASFLWETDEYQEEDSQNDSQWPSNTATVCVGNA 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12024286 12027284 - Cp4.1LG03g09580.1 Cpe03g01546 467263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01546 366 MobiDBLite consensus disorder prediction 209 240 - -
Cpe03g01546 366 MobiDBLite consensus disorder prediction 349 366 - -
Cpe03g01546 366 SUPERFAMILY TPR-like 244 345 IPR011990 GO:0005515
Cpe03g01546 366 SUPERFAMILY TPR-like 128 210 IPR011990 GO:0005515
Cpe03g01546 366 Gene3D Tetratricopeptide repeat domain 81 213 IPR011990 GO:0005515
Cpe03g01546 366 Gene3D Tetratricopeptide repeat domain 239 348 IPR011990 GO:0005515
Cpe03g01546 366 Pfam Tetratricopeptide repeat 125 166 - -
Cpe03g01546 366 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 238 348 - -
Cpe03g01546 366 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 1 109 - -
Cpe03g01546 366 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 112 211 - -
Cpe03g01546 366 MobiDBLite consensus disorder prediction 344 366 - -
Cpe03g01546 366 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 112 211 - -
Cpe03g01546 366 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 238 348 - -
Cpe03g01546 366 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01546 - - - bhj:120092966 595.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01546 Cpe-Chr3:12024286 Cpe15g00202 Cpe-Chr15:1689155 1.38E-13 dispersed
Cpe03g01546 Cpe-Chr3:12024286 Cpe05g00169 Cpe-Chr5:899558 1.65E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g786 . . . . . . . . . . . Cma14g01846 . Car14g01654 . . Cpe03g01546 . . . . . . . . . . . . . . . . Cone7ag0353 . Lsi05g01776 . . Cme06g00446 Blo02g00686 . . . . . . . . . Cmo14g01890 . . . . . . . . . . . . . Cla05g00404 Cam05g0441 Cec05g0448 Cco05g0449 Clacu05g0438 Cmu05g0416 Cre05g0478 . Csa03g01164 Chy06g00426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009424 0 1 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 33