Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01548 ATGGTGGAATCATGCAAGAAACCCTCATCGGTTCAGCTGGTTAAGAGGCTTGACTTCTCCAATTTGCTCGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGAAGGAACTCTTAACTGGGAGATACTACAGTTCAAGGCAAAGTTTCCTCGAGAAGTTTTGCTTTGTAGAGTTGGAGATTTTTATGAAGCAATTGGAATAGATGCTTGCATACTTGTTGAATATGCTGGTTTGAATCCTTTTGGAGGTCAGCGTATGGATAGTGTTCCAAAAGCTGGTTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACTCGTAACGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAAGGACCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCGGGCAGTCCCTATGTCTTTGGGCTTGTTGGGGTTGATCATGATCTCGACTTTCCAGAACCAATGCCTGTGGTCGGAATATCACGATCTGCAAGAGGCTATTGCATAAGCCTTGTGATAGAGACCATGAAGACATATTCGTCAGAGGATGGTTTGACAGAGGAGGCCTTGGTTACTAAGCTGCGCACTTGTCAATACCATCATTTATTTCTTCACACTTCATTAAGGAACAACTCCTCAGGTACTTGTCGCTGGGGTGAATTCGGTGAGGGTGGTCGGCTATGGGGGGAATGTAATTCCAGACATTTTGAGTGGTTGGATGGAAATCCTCTTACTAATCTTTTGTCTAAGGTTAAAGAGCTTTATGGTCTTGATGATGAAGTTACATTTAGGAACGTAACGATATCGTCCGAAAATAGGCCACATCCATTAACATTGGGAACCGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCGTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGTATATCAGGGATCTTCTTCTCAATCCTCCTGCTTATGAGATCGCGACCACTATTCAAGCAACATGCAGGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCACCCGCCAAGCTCGTGAAGTTATTGGAAATGAGGGAAGCCAATCATATTGAGTTCTGTAGAATGAAGAACGTACTTGACGAAATCTTACACATGCATAAAAATTGCGAGTTAAGCAACATCCTGAAATTGTTGATGGATCCTTCATCTGTGGCAACTGGGTTGAAAATTGACTATGAAACATTTGTCGACGAATGTGAATGGGCTTCCAGTAGAGTTGGTGAAATGATTTTTCTCGATAGCGAAAGCGAAAGGGATCAGAAAATCAGTTCTTATTTTATCATTCCTAATGATTTTTTTGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAAAGGATTCACATTGAAGAAGTGTGTACAGAAGTAGAAAGTGCAGCTGAAGCACTGTCTCTAGCAGTTACTGAAGATTTCGTCCCGATCATTTCAAGAATCAAGGCTACGACTGCGCCGCTAGGAGGTCCAAAGGGAGAAATATTGTATGCTCGGGATAATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAAAAGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGTAAAAAGGTCGGGGACGAGTGGTTTACGACGAAGAAGGTGGAAGATGCTTTAACAAGGTACCAAGAGGCCAATGCCAAAGCAAAAGCAAGAGTAGTGGATTTGCTGAGGCAACTTTCTTCTGAATTGCTTGCTAAAATGAACGTTCTAATATTTGCTTCCATGTTACTCATTATCGCCAAGGCGTTGTTCGCTCATGTGAGTGAAGGGAGGAGGAGAAAATGGGTTTTTCCTACCCTTGCTGCACCCAGTGATAGGTCCAAGGGGATGAAGCTGGTTGGACTATCTCCGTATTGGTTTGATACCATAGAAGGGAATGCTGTGCAGAATAGTATTGAGATGGAGTCGTTGTTTCTTTTGACGGGTCCAAATGGGGGTGGGAAATCTAGCTTGCTTCGATCCATTTGTGCAGCTGCTTTGCTTGGGATATGTGGATTTATGGTGCCAGCAGAGTCTGCCCTGATTCCTCATTTTGATTCTATTATGCTTCATATGAAATCTTTTGATAGTCCTGCTGATGGGAAAAGTTCTTTTCAGGTGGAAATGTCAGAGATGAGATCCATCATGAGTAGAGCAACGGAAAGCAGCCTCGTACTTATAGATGAAATCTGTCGAGGAACAGAAACAGCCAAAGGCACTTGTATTGCAGGGAGCATTGTTGAAGCTCTTGATAAAGTTGGGTGCCTTGGCATCGTCTCCACTCACTTGCATGGTATATTCAATTTGCCTTTGGATATCAATAACACTGTGTTCAAGGCAATGGGAAGTGTCTGTACTGATGGCCGTACGGTTCCCACTTGGAAGTTGATCAGTGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCAAAGAATGAAGGAATCTGTGAAGCTATAATTCATAGGGCTCAAGATTTGTATGTCTCAAATTATGTTGAACAAGGGATTTCAGGAAAACAGAAGATGAATTTGTATCCCTCAAATTCTTCTCATGCAAGGCTTAATGGCAATCACAAACCCCATCTCCTGTCAAATGGTGTTACAGTAGAAGCTGAACGCCCAAAAACAGAGAAAACTAAGAAAAAGGTTGTCTCTTGGAAGGAAATTGAGGGTGCTATCACTGCAATATGCCAAAAGAAGCTGATAGAGTTTCATAAGGATAAAAACACATTAAAACCTGCAGAAATCCAATGTGTTTTGATTGATTCTAGAGAGAAGCCACCTCCATCCACAGTCGGTGCTTCGAGTGTGTACGTAATTCTTAGACCAGATGGTAAATTCTATGTCGGACAGACTGATGATCTAGAGGGTCGAGTCCATTCGCATCGTTTAAAAGAAGGAATGCGGGATGCTGCATTTCTTTATTTTATAGTACCTGGGAAGAGCTTGGCGTGCCAGCTCGAAACACTTCTCATCAATCGACTTCCTGATCATGGGTTACAGCTAACTAATGTTGCTGATGGAAAGCACCGAAATTTTGGCACGTCCAATCTCTTATCAGAGAATGTGACTGTTTGTTCATAA 3165 42.69 MVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKEGTLNWEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSVPKAGCPVVNLRQTLDDLTRNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCISLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSGTCRWGEFGEGGRLWGECNSRHFEWLDGNPLTNLLSKVKELYGLDDEVTFRNVTISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYIRDLLLNPPAYEIATTIQATCRLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELSNILKLLMDPSSVATGLKIDYETFVDECEWASSRVGEMIFLDSESERDQKISSYFIIPNDFFEDMESSWKGRVKRIHIEEVCTEVESAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYARDNQSVWFKGRRFAPAVWAGSPGEKEIKQLKPALDSKGKKVGDEWFTTKKVEDALTRYQEANAKAKARVVDLLRQLSSELLAKMNVLIFASMLLIIAKALFAHVSEGRRRKWVFPTLAAPSDRSKGMKLVGLSPYWFDTIEGNAVQNSIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIMSRATESSLVLIDEICRGTETAKGTCIAGSIVEALDKVGCLGIVSTHLHGIFNLPLDINNTVFKAMGSVCTDGRTVPTWKLISGICRESLAFETAKNEGICEAIIHRAQDLYVSNYVEQGISGKQKMNLYPSNSSHARLNGNHKPHLLSNGVTVEAERPKTEKTKKKVVSWKEIEGAITAICQKKLIEFHKDKNTLKPAEIQCVLIDSREKPPPSTVGASSVYVILRPDGKFYVGQTDDLEGRVHSHRLKEGMRDAAFLYFIVPGKSLACQLETLLINRLPDHGLQLTNVADGKHRNFGTSNLLSENVTVCS 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12033756 12040847 + Cp4.1LG03g09680.1 Cpe03g01548 467265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01548 1054 Pfam MutS domain V 673 853 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cpe03g01548 1054 SUPERFAMILY GIY-YIG endonuclease 962 1025 IPR035901 -
Cpe03g01548 1054 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 83 1004 - -
Cpe03g01548 1054 Pfam MutS domain I 44 133 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cpe03g01548 1054 ProSitePatterns DNA mismatch repair proteins mutS family signature. 750 766 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cpe03g01548 1054 CDD ABC_MutS_homologs 659 842 - -
Cpe03g01548 1054 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 83 1004 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cpe03g01548 1054 Gene3D - 645 934 IPR027417 -
Cpe03g01548 1054 SUPERFAMILY DNA repair protein MutS, domain I 32 142 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cpe03g01548 1054 Gene3D DNA repair protein MutS, domain I 34 138 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cpe03g01548 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 853 IPR027417 -
Cpe03g01548 1054 Coils Coil 565 592 - -
Cpe03g01548 1054 SMART mutATP5 669 855 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01548 - - - csv:101209091 1895.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01548 Cpe-Chr3:12033756 Cpe17g00752 Cpe-Chr17:5929907 2.01E-06 dispersed
Cpe03g01548 Cpe-Chr3:12033756 Cpe14g00111 Cpe-Chr14:602249 1.74E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32