Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01554 ATGGATTCAGGGTTCTGCGCCGGCCATCTCGCGGAGCTCTTAGGTCCCAACACCACCAACGCCACCGGCGCTGCAAATTTCATCTGCGACCAATTTACCACCATCACCAACAACTTCTCCGACACCAAAAACGCCCTCGATAACACCTACCTTCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTTTGCGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCTGGAGGCCTCTTCTACTACCTCTTCGGCTACGCATTTGCCTTCGGATCCCCTTCCAATGGCTTCATTGGCCGCCATAACTTTGGCCTCAGTTCCTTCCCTACCTCCACCGCTGATTATAGTTTCTTCCTCTACCAGTGGGCGTTTGCGATTGCCGCCGCTGGGATTACCAGTGGATCTATCGCTGAGCGGACTCAATTCGTCGCTTATTTGATTTATTCCTCTGTTTTGACTGGATTTGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCTCCTGATGGTTGGGCTGGGGCTATGAAATCGGGAGGCGGATTGTTGTTCGGATCGGGAGTAATCGATTTCGCTGGCTCCGGCGTCGTCCATATGGTTGGGGGAATTGCAGGTCTGTGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATTTGACCACACGGGCCAGTCCGTAGCTATGCGAGGGCACAGCGCGTCTTTAGTCGTGCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCGTACACCACCGGGAACTTCTACGGCCAATGGAGCGCCGTCGGACGGACAGCGGTTACCACCACACTCGCCGGATGCACAGCGGCACTCACCACACTCTTCGGGAAGAGATTCCTCTCAGGACACTGGAACGTGACGGACGTTTGCAACGGACTCCTCGGCGGATTCGCAGCCATCACAGCCGGCTGCTCCGTCGTCGAACCGTGGGCGGCAATCATCTGCGGCTTCGTGGCCGCTCTCGTACTAATAACCTGCAACCACATCGCCGAGAAAGCGAAGTACGACGATCCGCTAGAAGCCGCCCAGCTTCACGGCGGCTGCGGCGCGTGGGGAGTGATATTCACAGCACTCTTCGCAACCAAGGAGTACGTGACGGAGGTATACGGCGGATCTCAACGACCTTACGGACTCCTAATGGGCGGCGGCGGGAGGTTACTTGCAGCGCATTTGATACAGATTGTGGTGATTGTAGGGTGGGTGAGCGGGACGATGGGGCCATTGTTCTTTGTTCTTCACAAACTGAAGCTTCTGAGAATCTCTAGTGAAGATGAAATGGCGGGGATGGATCTGACCCGCCATGGGGGATTTGCTTACACATATCATGATGAAGATGAAGCACAGAAAAGGGGGATTCAATTGAGCAGAGTGGAACCAAGATCTGCAACCCCCATTGGACACTAA 1500 55.47 MDSGFCAGHLAELLGPNTTNATGAANFICDQFTTITNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHNFGLSSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGAMKSGGGLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHTGQSVAMRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLITCNHIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVTEVYGGSQRPYGLLMGGGGRLLAAHLIQIVVIVGWVSGTMGPLFFVLHKLKLLRISSEDEMAGMDLTRHGGFAYTYHDEDEAQKRGIQLSRVEPRSATPIGH 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12071023 12072522 + Cp4.1LG03g09620.1 Cpe03g01554 467271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01554 499 PANTHER AMMONIUM TRANSPORTER 7 494 - -
Cpe03g01554 499 SUPERFAMILY Ammonium transporter 44 452 - -
Cpe03g01554 499 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 7 494 - -
Cpe03g01554 499 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Cpe03g01554 499 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cpe03g01554 499 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cpe03g01554 499 TIGRFAM amt: ammonium transporter 47 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01554 Cpe-Chr3:12071023 Cpe07g00817 Cpe-Chr7:7351775 0 dispersed
Cpe17g00239 Cpe-Chr17:1548409 Cpe03g01554 Cpe-Chr3:12071023 0 wgd
Cpe03g01554 Cpe-Chr3:12071023 Cpe05g00094 Cpe-Chr5:459595 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01554 K03320 - csv:101208366 909.827