Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01558 ATGAACTCTCAAAGTCAACGAAGTGAATGGAATTTAATATTCCAAAAACTTGCCGGGGAGGAGAAAAGATCCAATAAATGCGGAACAAGGAGCCTGGCGAAGACTCCATTAAGGATGGGTGAAGTGAAGCTGTATGGGAACTGGTCGAGTCCTTTCACTTACAGAGTCATATGGGCTTTAGCCATCAAAGGCATACCCTACGAATACGTAGAAGAAGACCTCTCCAACAAAAGCCCTTTGCTCCTTCACTATAATCCCATCCACAAGAAGGTCCCTGTCCTCGTCCATGGCGGAAAACCCATCTGTGAATCCACTCTCATCCTCGAATACATCGACGAGACATGGCCGCAGAATCCCCTGTTCCCTGCCGATCCCCTCGACCGAGCCGCAGCTCGAGGCATTGGCGAGGGGAAGTTCTTCGGCGGAGAGACGATCGGGATAGTGGATTTGGTGTACGGAATATTTGGAGATTGGTTGGGAGTGATTGAAGAGGTGATCGGCGAGAAACTGGTGGAAGCCGATTCATTTCCTCGGCTGCACGCTTGGATCAGAGCTTTCCTGGAAGCTCCGATGATTCGAGAGAACCGTCCCGATCGAGATCGGATGAATTAA 612 50.0 MNSQSQRSEWNLIFQKLAGEEKRSNKCGTRSLAKTPLRMGEVKLYGNWSSPFTYRVIWALAIKGIPYEYVEEDLSNKSPLLLHYNPIHKKVPVLVHGGKPICESTLILEYIDETWPQNPLFPADPLDRAAARGIGEGKFFGGETIGIVDLVYGIFGDWLGVIEEVIGEKLVEADSFPRLHAWIRAFLEAPMIRENRPDRDRMN 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12093760 12095344 - Cp4.1LG03g18250.1 Cpe03g01558 467275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01558 203 PANTHER GLUTATHIONE S-TRANSFERASE 137 202 - -
Cpe03g01558 203 PANTHER GLUTATHIONE S-TRANSFERASE 39 132 - -
Cpe03g01558 203 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 39 132 IPR045073 -
Cpe03g01558 203 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 137 202 IPR045073 -
Cpe03g01558 203 CDD GST_C_Tau 135 202 IPR045074 GO:0004364|GO:0006749
Cpe03g01558 203 SUPERFAMILY Thioredoxin-like 39 120 IPR036249 -
Cpe03g01558 203 Gene3D - 124 203 - -
Cpe03g01558 203 CDD GST_N_Tau 42 115 - -
Cpe03g01558 203 Pfam Glutathione S-transferase, N-terminal domain 41 113 IPR004045 -
Cpe03g01558 203 SUPERFAMILY GST C-terminal domain-like 113 202 IPR036282 -
Cpe03g01558 203 SFLD Glutathione Transferase (cytosolic) 42 132 IPR040079 -
Cpe03g01558 203 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 40 119 IPR004045 -
Cpe03g01558 203 Gene3D Glutaredoxin 38 123 - -
Cpe03g01558 203 SFLD Main (cytGST) 42 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01558 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - pvy:116142227 238.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01558 Cpe08g00369 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01558 Cpe-Chr3:12093760 Cpe08g00370 Cpe-Chr8:2308785 1.64E-72 dispersed
Cpe14g00390 Cpe-Chr14:2406631 Cpe03g01558 Cpe-Chr3:12093760 2.05E-35 dispersed
Cpe14g00391 Cpe-Chr14:2407964 Cpe03g01558 Cpe-Chr3:12093760 9.19E-35 dispersed
Cpe03g01558 Cpe-Chr3:12093760 Cpe03g01559 Cpe-Chr3:12095366 3.97E-71 tandem
Cpe08g00486 Cpe-Chr8:3114572 Cpe03g01558 Cpe-Chr3:12093760 8.20E-12 transposed
Cpe03g01558 Cpe-Chr3:12093760 Cpe08g00369 Cpe-Chr8:2306686 1.20E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120