Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01559 ATGCAGTCAACGCGCGAGCTTCCTGGGCAAGAAAACTCGCCAATTCATCGCGGCATTATAAAACGAAAGCTTGGTTATGATCCCAAAGCCATAACAATGGCGGATGAGGTGAAGCTTCATGGAAATTGGCTAAGTCCATTCAGTTGCAGAGTCATCTGGGCTCTAAAGCTGAAGGGGATCCCGTATGAATACGTAGAAGAAAATGTTGCCGACAAAAGTGCTCTGCTTTTGCACTACAATCCTGTCTACAAGAAGATTCCGGTGCTCGTCCACGGCCGAAAGCCGATCTGCGAGTCCATGATCATCCTCGACTACATCGACGAGACTTGGCCGGAGAACCCGCTCCTGCCCTTGGATCCATTCGAGAGAGCCACGGCTCGCTTCTGGATCAAATTTATAGAGGATAAAAGCCCGGTGCTTTGGGGAGTGTTTCTGGCGGACGGGGAAGACGATAGGGAAAAGGCAAGGAAGGCAACATTGGAAGTACTGCAGACGCTGGAAGAAAAGGCGTTCGGGGACGAGAAATTCTTCGGCGGAGACGAGATTAACATGGTGGATTTAGCATACGGGATGCTAGCGCGGTGGATGCCGGTGATCGAAGAGGTTGTTGGCGTAAAACTCCTCGATCCCGACATGTTCCCTCGCCTCCATGCTTGGGCGGAGAACTTCCGGCAAGCCGCCGTCATCAGAGACAACCTGCCTGATCACGACCAGATGGTGCCCTTGTTCAAGATCCGGCGAGAGCAGCTACTCCAAATTGCCAGGAAATGA 771 52.14 MQSTRELPGQENSPIHRGIIKRKLGYDPKAITMADEVKLHGNWLSPFSCRVIWALKLKGIPYEYVEENVADKSALLLHYNPVYKKIPVLVHGRKPICESMIILDYIDETWPENPLLPLDPFERATARFWIKFIEDKSPVLWGVFLADGEDDREKARKATLEVLQTLEEKAFGDEKFFGGDEINMVDLAYGMLARWMPVIEEVVGVKLLDPDMFPRLHAWAENFRQAAVIRDNLPDHDQMVPLFKIRREQLLQIARK 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12095366 12096429 - Cp4.1LG03g18240.1 Cpe03g01559 467276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01559 256 SFLD Main (cytGST) 33 252 - -
Cpe03g01559 256 SUPERFAMILY GST C-terminal domain-like 108 248 IPR036282 -
Cpe03g01559 256 CDD GST_C_Tau 120 246 IPR045074 GO:0004364|GO:0006749
Cpe03g01559 256 CDD GST_N_Tau 37 110 - -
Cpe03g01559 256 Gene3D - 119 254 - -
Cpe03g01559 256 Gene3D Glutaredoxin 31 117 - -
Cpe03g01559 256 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 35 248 IPR045073 -
Cpe03g01559 256 SUPERFAMILY Thioredoxin-like 37 135 IPR036249 -
Cpe03g01559 256 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 119 243 IPR010987 -
Cpe03g01559 256 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 35 114 IPR004045 -
Cpe03g01559 256 PANTHER GLUTATHIONE S-TRANSFERASE 35 248 - -
Cpe03g01559 256 Pfam Glutathione S-transferase, C-terminal domain 147 223 IPR004046 -
Cpe03g01559 256 Pfam Glutathione S-transferase, N-terminal domain 37 108 IPR004045 -
Cpe03g01559 256 SFLD Main.3: Omega- and Tau-like 33 252 IPR045073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01559 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 356.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01559 Cpe-Chr3:12095366 Cpe08g00370 Cpe-Chr8:2308785 7.69E-106 dispersed
Cpe20g00021 Cpe-Chr20:120671 Cpe03g01559 Cpe-Chr3:12095366 4.80E-43 dispersed
Cpe03g01559 Cpe-Chr3:12095366 Cpe03g01562 Cpe-Chr3:12105172 1.68E-06 proximal
Cpe03g01558 Cpe-Chr3:12093760 Cpe03g01559 Cpe-Chr3:12095366 3.97E-71 tandem
Cpe03g01559 Cpe-Chr3:12095366 Cpe03g01560 Cpe-Chr3:12097087 6.08E-135 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120