Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01560 ATGATCTATTTTAGGTTTAACAAGGTGAAGCTCCATGGAAATGGGCTAAGTCCGTTTAGTTGCAGAGTGGTCTGGGCTCTGAAGCTTAAGGGGATCCCCTACGAATTTGTACAGGAGAATCTTCCCCACAAAAGTGCTCTGCTTTTGCACTACAATCCAGTCTACGAGACCATTCCGGTGCTCGTCCATGCCGGAAACCCCATCTGCGACTCCATGATCATCCTCCACTACATCGACGAGACTTGGCCGGAGAACCCGCTGCTCCCTTCCGATCCGTTTCAGAGAGCTGCGGCTCGCTTCTGGATCAAGTTTATTGAGGATAAGATCCCTGTTCTTCGGGGAATGCTTGTGGTGGAAGGGGAAGAAGATAGGGAAAAGGTGAGAAAAGCGAGCTTGGAAGTGCTGCAGACGCTGGAAGAACAGGCGTTCGGCGACAAGAAATTCTTCGGCGGAGATGAAATTAACATGGTGGATTTAGCCTACGGGATTCTCGCGCGGTGGTTGCCGGTGTTCCAAGAGGTCGTCGGTATAAAGCTCTACGAACCAGATACATTCCCTCGCTTCCATGCTTGGGCGGAGAATTTCCGGCAAGCCGCCGTCATCAGAGACAATTTGCCGGATCACGCCCAGATGGTGCCCCTGTTCAAGATCCGGCGGGAGTACCTACTCCAAACTGCCCGGAAATGA 687 52.11 MIYFRFNKVKLHGNGLSPFSCRVVWALKLKGIPYEFVQENLPHKSALLLHYNPVYETIPVLVHAGNPICDSMIILHYIDETWPENPLLPSDPFQRAAARFWIKFIEDKIPVLRGMLVVEGEEDREKVRKASLEVLQTLEEQAFGDKKFFGGDEINMVDLAYGILARWLPVFQEVVGIKLYEPDTFPRFHAWAENFRQAAVIRDNLPDHAQMVPLFKIRREYLLQTARK 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12097087 12098642 - Cp4.1LG03g18220.1 Cpe03g01560 467277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01560 228 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 215 IPR010987 -
Cpe03g01560 228 Gene3D Glutaredoxin 5 87 - -
Cpe03g01560 228 SUPERFAMILY Thioredoxin-like 7 108 IPR036249 -
Cpe03g01560 228 CDD GST_N_Tau 9 82 - -
Cpe03g01560 228 Pfam Glutathione S-transferase, N-terminal domain 9 80 IPR004045 -
Cpe03g01560 228 CDD GST_C_Tau 92 218 IPR045074 GO:0004364|GO:0006749
Cpe03g01560 228 SFLD Glutathione Transferase (cytosolic) 7 225 IPR040079 -
Cpe03g01560 228 SFLD Main.3: Omega- and Tau-like 7 225 IPR045073 -
Cpe03g01560 228 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 220 IPR045073 -
Cpe03g01560 228 SUPERFAMILY GST C-terminal domain-like 80 221 IPR036282 -
Cpe03g01560 228 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 7 86 IPR004045 -
Cpe03g01560 228 PANTHER GLUTATHIONE S-TRANSFERASE 8 220 - -
Cpe03g01560 228 Gene3D - 88 226 - -
Cpe03g01560 228 Pfam Glutathione S-transferase, C-terminal domain 119 195 IPR004046 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01560 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 334.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01560 Cpe08g00370 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01560 Cpe-Chr3:12097087 Cpe08g00370 Cpe-Chr8:2308785 3.66E-95 dispersed
Cpe17g00796 Cpe-Chr17:6241127 Cpe03g01560 Cpe-Chr3:12097087 1.05E-08 dispersed
Cpe03g01559 Cpe-Chr3:12095366 Cpe03g01560 Cpe-Chr3:12097087 6.08E-135 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g826 . . . . . . . . . . . Cma14g01862 . . . Cpe08g00370 Cpe03g01560 Bhi01g00028 . . . . . . . . . . . . . . . . . Lsi05g01794 . . Cme06g00428 . . . . . . . . . Cmo06g01285 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120