Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01568 ATGGCAATCGAAACGAGCAAGCAAATAAGAAGCAACAATGGCGGGCGTCGGCTATCTTCTTCACCACTGCAACTCCAAGCAGTTCATCTCCCTCCTCTCTTTTCGTGCCCAGTATTTCAATATTCAATTCTCTCTCTCTGCCCTAGAGAGAGAAAAACCGAAAACAAGCATCCAAAGCGCGGCGTGGGTAGTGGTTCTTCGAGAGAAACGGAAAGAGGCTGCAATATCAATGATACGAGCCCGAGAAGAAGGGTTTGGAAATTGATGCAAATGTCGTCGATGCCATCTTCGAGACAACGTTACCTCTTCTTCTTGTTCTTGTTCTTGTTCTTCTCTGTTCTTCAATGCGTTTCTTATGTCTCTGCTACCAATGGCGAAGCCTCTCTGTTGTTTTCATGGCTTCGAAGTTCTGGTAGTAGTTCTCATTTCTCCGATTGGAACGTTCTTGATCCTAATCCGTGTAAATGGACTTCCATTTCTTGCTCCTCTCAAGGTTTTGTTACTGAAATTAATATTCAGTTTGTTCCTCTTCGGCTTCCTCTGCCTTCGAATCTCTCTTCGTTTCGATTTCTTCAGAAGCTTGTTATCTCCGGCGCTAATGTCACCGGGAAAATCCCCGATGATATTGGAAACTGCACGGAACTTACGATTCTCGACTTGAGCTCCAATAATCTTGCCGGTTCTATTCCCGTAAGTATTGGAAACCTCCGGAAGTTAGAGGACTTGATTTTGAACGGAAACCAGTTGACGGGGAGCATTCCGGCGGAGTTAGGGCTTTGCTCTAGTCTCAAGAATCTCTTCGTTTTTGATAACTTACTGTCTGGATTTTTGCCGCTGGACTTCGGAAAATTGGGAAATCTCGAAGTTCTTCGAGCGGGAGGTAACAAAGAAATCACCGGAGAAATCCCACCGGAGATTGGAAACTGCAGTAAACTGACATTGACTGGCCGATACTCGGATTTCCGGCCGGTTACCGTCGTCTCTTGGAAGGCTTCAGAAGCTTCAAACATTGTCGATTTACACGACTTTGCTCTCCGGCGAAATCCCTTCCGATTTAGTCTCTCTGGTTCGATTCCACCACAGATTGGGGAGCTTAAAAAACTTGAGCAATTGTTCTTATGGCAGAACAATCTTGTTGGGGCAATCCCCAAAGAGGTTGGTAACTGTAGCAGTTTGAGAAGAATTGATTTCTCTTTGAATTACCTGTCTGGAACTTTACCTTTAACTTTAGGAGGACTTACAGAACTAGAGGACTTTATGATTAGTGATAACAATGTCTCTGGTTCGATCCCTGCTAGTCTTTCAAATGCCAAGAATTTGTTGCAGCTGCAATTTGATAACAATCAAATTTCTGGGTTGATTCCACCAGAGCTTGGGGCTTTGTCAAAGCTTACTGTCTTGTTGGCATGGCAGAACCAGCTTGAAGGAAGCATTCCTGAAAGTTTGGAGGGTTGTAGTAATCTTGAAGCTATTGATTTGTCTCATAACTCACTCACAGGTGCTATTCCTTCTGGGTTGTTTCAGCTTCATAATCTCACAAAACTTCTGTTGATTTCCAATGATATATCTGGTTCGATCCCACCCGAAATCGGTAATGGCAGCTCGCTCGTGCGGCTGCGGCTTGGAAACAACCGGATTACCGGTGGGATTCCGAGAACAATTGGCAGGATGAGTAGTTTAGACTTTCTTGATCTCTCTGGGAATCGAATCTCTGGTCCATTGCCTGATGAGATTGGCAATTGCAGAGAGTTGCAGATGATAGATTTGAGCTATAATGCTTTAGAAGGTCCCTTGCCTAGCTCTTTGGCATCTTTGTCTGAGCTTCAGGTCTTAGATGTTTCATCGAATCGATTTTCGGGTCAGCTCCCGGGGAGTTTCGGGAGTCTTGTTTCGTTAAATAAGCTTGCTTTGAGAGCAAACTTATTCTCGGGAGCAATACCGGCATCGCTCGGGCTATGTTCGGGTTTGCAACGGCTCGATCTTAGTAGTAACCATTTTACAGGCAACATTCCAGTGGAGCTGGGACGGCTTGATGCTCTTGAAATTGCTCTTAATCTCAGCAACAATGAGCTCTATGGGCCAATCCCACCTCAGATATCTGCACTTACTAAGCTTTCAGTTCTTGATCTGTCAAGAAACAAGCTCGAGGGGGACTTGAAACCGCTTGCAGGGCTGAGTAATTTGGTCTCTCTCAATATCTCTTACAATAACTTCAGTGGTTATCTTCCTGACAACAAGCTTTTCAGGCAGCTAGCACCAACGGACCTGACTGGCAATGAAAGGCTCTGTTCTTCGATCAGGGACTCATGTTTCTTAATGGATGGATCAGGACTAACAAGGAATGTAAACAACGTGAGATTATCTCATAAACTTATGATAATAGAGGAAATGGTGCAAGTTTTAGGCATAGCATTGCTGTGTGTGAACTTCGCCCCGGACGAGCGCCCGAACATGAAAGATGTCGCTGCCATGCTTAAAGAAATCAAGCAAGAAACCGACTCGAAGATCGACCTGCTCGTTGAAGGGGGAAGTACTGATGGTCAAGAAAACAAGAGGCCAAAGGGGGTGTTGGCATTGACATCCTCTTCTAAACTGGGAATAGAAAGTGTTCGTGCCACAAGCGATGGTTTCAGCCTTTCTTCTTCCTCACTGATCTACCCATCTTCCTCCATTCCCAAAATGGATGGAGGCGATGCCGATGCTGAGGGGGTGCCGCCGGGATCGAATAATTTGGCTGGCGTTGGTGGAGCTGGTGGCATTGGGGGCGGCGGCAGCGTTGTGTCGGTGGAGACGTCGGTCCGTAAGTAA 2808 45.76 MAIETSKQIRSNNGGRRLSSSPLQLQAVHLPPLFSCPVFQYSILSLCPRERKTENKHPKRGVGSGSSRETERGCNINDTSPRRRVWKLMQMSSMPSSRQRYLFFLFLFLFFSVLQCVSYVSATNGEASLLFSWLRSSGSSSHFSDWNVLDPNPCKWTSISCSSQGFVTEINIQFVPLRLPLPSNLSSFRFLQKLVISGANVTGKIPDDIGNCTELTILDLSSNNLAGSIPVSIGNLRKLEDLILNGNQLTGSIPAELGLCSSLKNLFVFDNLLSGFLPLDFGKLGNLEVLRAGGNKEITGEIPPEIGNCSKLTLTGRYSDFRPVTVVSWKASEASNIVDLHDFALRRNPFRFSLSGSIPPQIGELKKLEQLFLWQNNLVGAIPKEVGNCSSLRRIDFSLNYLSGTLPLTLGGLTELEDFMISDNNVSGSIPASLSNAKNLLQLQFDNNQISGLIPPELGALSKLTVLLAWQNQLEGSIPESLEGCSNLEAIDLSHNSLTGAIPSGLFQLHNLTKLLLISNDISGSIPPEIGNGSSLVRLRLGNNRITGGIPRTIGRMSSLDFLDLSGNRISGPLPDEIGNCRELQMIDLSYNALEGPLPSSLASLSELQVLDVSSNRFSGQLPGSFGSLVSLNKLALRANLFSGAIPASLGLCSGLQRLDLSSNHFTGNIPVELGRLDALEIALNLSNNELYGPIPPQISALTKLSVLDLSRNKLEGDLKPLAGLSNLVSLNISYNNFSGYLPDNKLFRQLAPTDLTGNERLCSSIRDSCFLMDGSGLTRNVNNVRLSHKLMIIEEMVQVLGIALLCVNFAPDERPNMKDVAAMLKEIKQETDSKIDLLVEGGSTDGQENKRPKGVLALTSSSKLGIESVRATSDGFSLSSSSLIYPSSSIPKMDGGDADAEGVPPGSNNLAGVGGAGGIGGGGSVVSVETSVRK 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12135078 12140485 - Cp4.1LG03g18140.1 Cpe03g01568 467285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01568 935 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 794 888 - -
Cpe03g01568 935 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 97 792 - -
Cpe03g01568 935 SUPERFAMILY L domain-like 353 503 - -
Cpe03g01568 935 MobiDBLite consensus disorder prediction 54 76 - -
Cpe03g01568 935 Gene3D Ribonuclease Inhibitor 503 597 IPR032675 -
Cpe03g01568 935 Gene3D Ribonuclease Inhibitor 276 405 IPR032675 -
Cpe03g01568 935 Gene3D Ribonuclease Inhibitor 598 682 IPR032675 -
Cpe03g01568 935 Gene3D Ribonuclease Inhibitor 683 770 IPR032675 -
Cpe03g01568 935 SUPERFAMILY L domain-like 454 773 - -
Cpe03g01568 935 PRINTS Leucine-rich repeat signature 488 501 - -
Cpe03g01568 935 PRINTS Leucine-rich repeat signature 702 715 - -
Cpe03g01568 935 ProSiteProfiles Leucine-rich repeat profile. 704 726 IPR001611 GO:0005515
Cpe03g01568 935 SUPERFAMILY L domain-like 139 313 - -
Cpe03g01568 935 Pfam Leucine rich repeat 191 249 IPR001611 GO:0005515
Cpe03g01568 935 Pfam Leucine rich repeat 607 666 IPR001611 GO:0005515
Cpe03g01568 935 Pfam Leucine rich repeat 535 594 IPR001611 GO:0005515
Cpe03g01568 935 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515
Cpe03g01568 935 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 794 888 - -
Cpe03g01568 935 MobiDBLite consensus disorder prediction 894 935 - -
Cpe03g01568 935 SMART LRR_typ_2 461 485 IPR003591 -
Cpe03g01568 935 SMART LRR_typ_2 365 389 IPR003591 -
Cpe03g01568 935 SMART LRR_typ_2 702 726 IPR003591 -
Cpe03g01568 935 SMART LRR_typ_2 557 581 IPR003591 -
Cpe03g01568 935 SMART LRR_typ_2 605 628 IPR003591 -
Cpe03g01568 935 SMART LRR_typ_2 509 533 IPR003591 -
Cpe03g01568 935 SMART LRR_typ_2 236 260 IPR003591 -
Cpe03g01568 935 Gene3D Ribonuclease Inhibitor 406 502 IPR032675 -
Cpe03g01568 935 Gene3D Ribonuclease Inhibitor 126 275 IPR032675 -
Cpe03g01568 935 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 97 792 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01568 - - - cpap:110813950 820.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01568 Cpe-Chr3:12135078 Cpe17g00242 Cpe-Chr17:1577288 0 dispersed
Cpe03g01568 Cpe-Chr3:12135078 Cpe12g00103 Cpe-Chr12:631805 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g842 . . . . . . . . Cmo08g01007 . . . . . . . Cpe03g01568 . . . . . . . . . . . . . . Cone14ag0208 Cone15ag0229 . . . . . . . . . . . . . . . . . Cma08g01036 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000434 1 4 5 2 3 4 5 3 4 4 4 4 5 4 3 5 4 5 6 4 4 3 3 2 3 4 3 1 2 3 107