Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01570 ATGACAATGGCGGAATCTGGAGGGTGGATTCGTTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGAGCAATTGCAAGAATTCCCAAAGACATTCCTGAAATTGATAATGAGGCAACGGGGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAGGAGCCTGAGGCTGAGACTCCCGGCAATAAGCATGCCGTGGACAACCCAGACGAGATCGCTGCTATGGTTGACATGCCTGGCACTTTGCGACATGCCGTTATACAGGATGAACCTCTCTGGATCGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAACAGTTTCAAGACAATTGATGCCCGTGGGTCCAATGTGCATATTGCTAATGGAGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGTTCACCCAATCACGTTGGGTGGAGAACAATTGCTGATGGGGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATTGATCACAATTCCCTCTCTAACTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACCGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTGATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTACAATCTTACTGTTCATCATTATTGTCCTTTTATTCATTTTAAGCCACCACAGTTTTCTGAAATGTCAGCTTCAAGCTGCCATGTCTTGATGACAACCAGATCCGTGACCAAGAGAGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAAGGAGACCTATTGATGAATGGTGCTTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCAAAATCTTCATCCATGGTTGCTACCATAACAGCCACCGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCCTGCTAG 1098 46.36 MTMAESGGWIRLFLLVVFMLFVGAIARIPKDIPEIDNEATGKLQSSSNSSMAVRLEEPEAETPGNKHAVDNPDEIAAMVDMPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGSNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRYNLTVHHYCPFIHFKPPQFSEMSASSCHVLMTTRSVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVATITATAGALSCRRGHPC 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12149997 12154464 - Cp4.1LG03g18170.1 Cpe03g01570 467287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01570 365 Gene3D - 62 358 IPR012334 -
Cpe03g01570 365 MobiDBLite consensus disorder prediction 39 53 - -
Cpe03g01570 365 PRINTS Pollen allergen Amb family signature 110 126 IPR018082 -
Cpe03g01570 365 PRINTS Pollen allergen Amb family signature 174 195 IPR018082 -
Cpe03g01570 365 PRINTS Pollen allergen Amb family signature 74 99 IPR018082 -
Cpe03g01570 365 PRINTS Pollen allergen Amb family signature 336 359 IPR018082 -
Cpe03g01570 365 PRINTS Pollen allergen Amb family signature 307 331 IPR018082 -
Cpe03g01570 365 PANTHER PECTATE LYASE 18-RELATED 82 362 IPR045032 GO:0030570
Cpe03g01570 365 SMART amb_all 102 299 IPR002022 -
Cpe03g01570 365 MobiDBLite consensus disorder prediction 39 70 - -
Cpe03g01570 365 PANTHER PECTATE LYASE 82 362 - -
Cpe03g01570 365 Pfam Pectate lyase 113 265 IPR002022 -
Cpe03g01570 365 SUPERFAMILY Pectin lyase-like 66 356 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01570 Cpe-Chr3:12149997 Cpe09g00992 Cpe-Chr9:8789668 4.13E-130 dispersed
Cpe12g00102 Cpe-Chr12:619595 Cpe03g01570 Cpe-Chr3:12149997 1.12E-153 wgd
Cpe15g00122 Cpe-Chr15:968547 Cpe03g01570 Cpe-Chr3:12149997 1.63E-11 wgd
Cpe17g00243 Cpe-Chr17:1588320 Cpe03g01570 Cpe-Chr3:12149997 5.04E-08 wgd
Cpe03g01570 Cpe-Chr3:12149997 Cpe05g00107 Cpe-Chr5:547453 8.76E-151 wgd
Cpe03g01570 Cpe-Chr3:12149997 Cpe08g00382 Cpe-Chr8:2377087 3.12E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01570 K01728 - csv:101218188 467.233