Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01575 ATGGAGAGTATGAAGGAGATGGAGACTGAATGGATCATGGATGTTCCCGATACACCTGATCGGTTAGCTTCCAGACAAAGTAATGGTGGACATTTTGTTCAAACTGAGACTGATTCATCTTTATCTAATCGTTTAAGAAACCCTGATTTCATGACAGAAAAGGGGATGAATGGCATGAAGGGCCTGGGGGTGCTTGTCAGTGAAAATGGGGATGAGTTGAGATTAGATAGTAGTTCCAAAAATATTCCTGGTGAGAATTTTAAGGGTCATAGAAACACCATTATTCTTTCACCGGGAGAGGATTCAGCATTGAAAAATAATCTGTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATATCAGGGGCCGAAACGTTTTATTTGTCCTCGTCGCTTGGATAAAGGGATAACTATATCTGTTGATTCTCTTTCCAAACCACCACCTTGTCAAGAAAATCCTCAAACGTTTAATCGTAATGTGTCTAAGGACTGTAAGATTGAAAACACATCAAATGAACAGTCTGCACGTTACATACCAATTTCTCCAAAGAAACCCAACGTGAACACTAAAGGGAAGGAAAAGGTTGTTGAGGAATCATTCCAAGATGTTGGTTTATCCATGATTCATAGAAAGGGAGTTGAAAAATCCAATAACATTAATACTCGACATGAGAAGCAAGTTTTGGGTCATCGTCAGTTTGCAAGCTCCCCTAGAGCTACTGGGCACAAGAGGTTGGTACGGAATGGTTGTATCTCACCTCATAATGTTACAATAAGAGCAAAGAATTTATCTGAGCAGTGTGAAAAGAGTTCTAGAGCTGTTGATGAGAACAATTTGAGGAACATGCCATCAAACAGTCCATCTTGTCCGATAGATATAAATGATATAGTTGCTGAAGACAATTGTAGTAGCAAAGATAAAGGAAAGGGGATTATGCGTCAGCCTTCTGTATCACATGATAATGATTATGTCAGAGTTATTTCTGCTTCTAGCAGTGACACGGAAAAGGCTGTTGGAGCTAATCCAGCCCGAACGTCCAGATTAGGTACATCTGAATGTTTTGAAGAAGTAGGTGTTTGGAGAAGAACACATAATCATTCAAGGAAAGGGATTGCCTTGTCTAATCCATCTGGGAGTTCTTTTAAGAAGATAGATAACGTTGGAAGGTTTTCTAATGAAAAAATTGAAATTGTCATGGAGAGACAAATCCCTAGTGGGCAAGAACATGTAGCAGAAACTGATTGTGCAGGAAATGGTGATACATCTCAAAGGGCTTCCAGCATTGTGCCCAAAATAGAACAAACTATTGTACCGATGCATGTTGAAAGCAAACTAAACAAAAAACAAAGGAAACACGGATCAACTTCACAAATTAATACTTCATGCCCCATTCCAGATGTTGTGTACCTTGGTCCGTCTGAGGAATCTTCAAACTCAAGGTCAACTAGACTCCAGAGTCGAAGAATTCGTGATAGTTTGAATGAAGTTATTGAGGTTGATGAGTTGTCACCTGAAATGAGACACCCTGTCTCCCAGAATGTTGGCAGCTTAAATGATAACACCTCAGATGCTAGGGCAAGACAACTTGAAGCTGATGAGATGTTGGCTCGTGAACTTCAGGAGCAACTATATCAGGAGATCCCTATTGGAGGAGAAGAGGTGATTGATGAACATTTAGCTATGGCACTGCAGCAGGTGGAGCATGGACATTTTGCACCCTCCCGCCAGACTTACAGTAGTCAGAGGGGCTCACTGGTAGCACAGGCAAATAGACGAACTCGATCTCAATCTTCACAAAACTCTTCTAATATAACACGGGCTCGAGTAACCCACTCTACACGTATGGCACAGATGAGGAATCAATTTTTTGGTGGCTCTCATAGAGTGTCAACTAGACAAAGGAATGTTAATTTTCCTGTGCATATGGATTTGGATATGAGACTTGATATATTGGAAGCTCTGGAGGCTGCGGTTGGAGAAATGGAAGATGCAAGAATGAATAGGGACATCTTGCACAGCCGGCGTGATTTCAACGAGAATGATTATGAAATGCTGCTATCCCTTGACGAGAACAATCACCGCCATGCTGGTGCATCGACTAACCGGATTAATAGTTTGCCACAATCTACAGTACAGACTAACAGCATGGAAGACCCTTGTGCAATTTGTCTCGATACGCCAGCCATCGGAGATGTCATTCGCCATCTACCTTGCTTACACAAATTTCATAAAGATTGTATTGATCCATGGCTACAGAGGCGAACATCATGCCCGAAAAGTCCTAAAGACTTTTTCCTGGACGACGATGGTCGTCATAAAATGATGCTCTCGTCGTGTATTTTCTCTAATTTTCCCTTCGTCTCGTCGTATAGCCTGTTAGAA 2382 41.27 MESMKEMETEWIMDVPDTPDRLASRQSNGGHFVQTETDSSLSNRLRNPDFMTEKGMNGMKGLGVLVSENGDELRLDSSSKNIPGENFKGHRNTIILSPGEDSALKNNLLLRKGGREKYSYQGPKRFICPRRLDKGITISVDSLSKPPPCQENPQTFNRNVSKDCKIENTSNEQSARYIPISPKKPNVNTKGKEKVVEESFQDVGLSMIHRKGVEKSNNINTRHEKQVLGHRQFASSPRATGHKRLVRNGCISPHNVTIRAKNLSEQCEKSSRAVDENNLRNMPSNSPSCPIDINDIVAEDNCSSKDKGKGIMRQPSVSHDNDYVRVISASSSDTEKAVGANPARTSRLGTSECFEEVGVWRRTHNHSRKGIALSNPSGSSFKKIDNVGRFSNEKIEIVMERQIPSGQEHVAETDCAGNGDTSQRASSIVPKIEQTIVPMHVESKLNKKQRKHGSTSQINTSCPIPDVVYLGPSEESSNSRSTRLQSRRIRDSLNEVIEVDELSPEMRHPVSQNVGSLNDNTSDARARQLEADEMLARELQEQLYQEIPIGGEEVIDEHLAMALQQVEHGHFAPSRQTYSSQRGSLVAQANRRTRSQSSQNSSNITRARVTHSTRMAQMRNQFFGGSHRVSTRQRNVNFPVHMDLDMRLDILEALEAAVGEMEDARMNRDILHSRRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQTNSMEDPCAICLDTPAIGDVIRHLPCLHKFHKDCIDPWLQRRTSCPKSPKDFFLDDDGRHKMMLSSCIFSNFPFVSSYSLLE 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12184187 12190372 - Cp4.1LG03g18180.1 Cpe03g01575 467292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01575 794 SMART ring_2 720 760 IPR001841 -
Cpe03g01575 794 MobiDBLite consensus disorder prediction 445 465 - -
Cpe03g01575 794 MobiDBLite consensus disorder prediction 587 609 - -
Cpe03g01575 794 CDD RING-H2_PA-TM-RING 720 758 - -
Cpe03g01575 794 Pfam Ring finger domain 720 758 IPR001841 -
Cpe03g01575 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 764 IPR013083 -
Cpe03g01575 794 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 296 758 - -
Cpe03g01575 794 PANTHER - 296 758 - -
Cpe03g01575 794 ProSiteProfiles Zinc finger RING-type profile. 720 758 IPR001841 -
Cpe03g01575 794 MobiDBLite consensus disorder prediction 22 46 - -
Cpe03g01575 794 SUPERFAMILY RING/U-box 715 758 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01575 - - - cmax:111479662 1430.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01575 Cpe08g00384 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02556 Cpe-Chr1:20846319 Cpe03g01575 Cpe-Chr3:12184187 8.21E-07 dispersed
Cpe03g01575 Cpe-Chr3:12184187 Cpe13g01106 Cpe-Chr13:8898256 1.19E-13 dispersed
Cpe03g01575 Cpe-Chr3:12184187 Cpe08g00384 Cpe-Chr8:2405944 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g856 . . . . . Bpe14g01298 . . . . . Cma14g01878 . Car14g01680 . Cpe08g00384 Cpe03g01575 . . . . . . . . . . . . . . Cone14ag0212 Cone15ag0233 . . Lsi05g01818 . . . . . . . . . . . . . Cmo14g01926 . . . . . . . . . . . . . . . . . . . . . Csa03g01121 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35