Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01589 ATGGATAGCGACAAAAAGGTCTTCACCTTGAAGGAAGTCGCAGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAATTCTTAGAAGACCATCCTGGTGGTGACGATGTATATGATGTGACCAAATTCTTAGAAGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAGGATGCAACCGACGACTTCGAAGACGTGGGGCATAGTGACAATGCAAGAGAAATGATGGATCAATACTATGTCGGAGAGATCGATGCTTCAACAATTCCAAAGAAGGTCGCATACACGCCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCAGAGTTCATCATCAAGCTTCTCCAATTCCTCGTTCCTCTTGCAATTTTGGGATTGGCAGTCGCCATACGCTTCTACACCAAACAAGCTTGA 453 44.81 MDSDKKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12270252 12275339 - Cp4.1LG03g18120.1 Cpe03g01589 467306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01589 150 Gene3D - 1 45 IPR036400 -
Cpe03g01589 150 PANTHER CYTOCHROME B5-LIKE 46 148 - -
Cpe03g01589 150 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 97 IPR001199 -
Cpe03g01589 150 PANTHER CYTOCHROME B5 46 148 - -
Cpe03g01589 150 PANTHER CYTOCHROME B5-LIKE 1 46 - -
Cpe03g01589 150 Gene3D - 46 100 IPR036400 -
Cpe03g01589 150 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cpe03g01589 150 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 45 106 IPR036400 -
Cpe03g01589 150 SMART Cyt_b5_2 8 97 IPR001199 -
Cpe03g01589 150 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 45 IPR001199 -
Cpe03g01589 150 Pfam Cytochrome b5-like Heme/Steroid binding domain 45 96 IPR001199 -
Cpe03g01589 150 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 46 IPR036400 -
Cpe03g01589 150 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 52 59 IPR018506 GO:0020037
Cpe03g01589 150 PANTHER CYTOCHROME B5 1 46 - -
Cpe03g01589 150 PRINTS Cytochrome B5 signature 71 78 IPR001199 -
Cpe03g01589 150 PRINTS Cytochrome B5 signature 56 70 IPR001199 -
Cpe03g01589 150 PRINTS Cytochrome B5 signature 46 56 IPR001199 -
Cpe03g01589 150 PRINTS Cytochrome B5 signature 84 96 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01589 Cpe-Chr3:12270252 Cpe05g00584 Cpe-Chr5:3539455 5.92E-65 dispersed
Cpe12g00095 Cpe-Chr12:569324 Cpe03g01589 Cpe-Chr3:12270252 2.46E-68 wgd
Cpe03g01589 Cpe-Chr3:12270252 Cpe05g00119 Cpe-Chr5:621104 2.81E-57 wgd
Cpe03g01589 Cpe-Chr3:12270252 Cpe08g00396 Cpe-Chr8:2509521 1.87E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01589 K23490 - csv:101214209 258.07