Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01589 ATGGATAGCGACAAAAAGGTCTTCACCTTGAAGGAAGTCGCAGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAATTCTTAGAAGACCATCCTGGTGGTGACGATGTATATGATGTGACCAAATTCTTAGAAGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAGGATGCAACCGACGACTTCGAAGACGTGGGGCATAGTGACAATGCAAGAGAAATGATGGATCAATACTATGTCGGAGAGATCGATGCTTCAACAATTCCAAAGAAGGTCGCATACACGCCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCAGAGTTCATCATCAAGCTTCTCCAATTCCTCGTTCCTCTTGCAATTTTGGGATTGGCAGTCGCCATACGCTTCTACACCAAACAAGCTTGA 453 44.81 MDSDKKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12270252 12275339 - Cp4.1LG03g18120.1 Cpe03g01589 467306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01589 150 Gene3D - 1 45 IPR036400 -
Cpe03g01589 150 PANTHER CYTOCHROME B5-LIKE 46 148 - -
Cpe03g01589 150 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 97 IPR001199 -
Cpe03g01589 150 PANTHER CYTOCHROME B5 46 148 - -
Cpe03g01589 150 PANTHER CYTOCHROME B5-LIKE 1 46 - -
Cpe03g01589 150 Gene3D - 46 100 IPR036400 -
Cpe03g01589 150 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cpe03g01589 150 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 45 106 IPR036400 -
Cpe03g01589 150 SMART Cyt_b5_2 8 97 IPR001199 -
Cpe03g01589 150 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 45 IPR001199 -
Cpe03g01589 150 Pfam Cytochrome b5-like Heme/Steroid binding domain 45 96 IPR001199 -
Cpe03g01589 150 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 46 IPR036400 -
Cpe03g01589 150 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 52 59 IPR018506 GO:0020037
Cpe03g01589 150 PANTHER CYTOCHROME B5 1 46 - -
Cpe03g01589 150 PRINTS Cytochrome B5 signature 71 78 IPR001199 -
Cpe03g01589 150 PRINTS Cytochrome B5 signature 56 70 IPR001199 -
Cpe03g01589 150 PRINTS Cytochrome B5 signature 46 56 IPR001199 -
Cpe03g01589 150 PRINTS Cytochrome B5 signature 84 96 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01589 K23490 CYB5; cytochrome b5 - csv:101214209 258.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01589 Cpe-Chr3:12270252 Cpe05g00584 Cpe-Chr5:3539455 5.92E-65 dispersed
Cpe12g00095 Cpe-Chr12:569324 Cpe03g01589 Cpe-Chr3:12270252 2.46E-68 wgd
Cpe03g01589 Cpe-Chr3:12270252 Cpe05g00119 Cpe-Chr5:621104 2.81E-57 wgd
Cpe03g01589 Cpe-Chr3:12270252 Cpe08g00396 Cpe-Chr8:2509521 1.87E-89 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156