Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01591 ATGGAGAAGGACGATAACTACTCGAACGAAGCTCCTATGCCGCCAAGCTTCTCCAGCCACCACCACCACCAACACGATCTCTACAACAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAACGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCTACCTCCTCCGCCGCTGCAATCGGTAACTTCTCCGGACAAGCTCAGCTTCGCTGAGGTTATGCAGTTTGCCGACTTCGGTCCGAAGCTCAGCCTCAACCGGTTCGACGAGGATGACGAACCAGCCGGGATTGACCCAGTCTACTTCTTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCCGGAGAGGAGGAAGCGGCGGAGATGGGAGGCAGAATTGTAGGGGAGTTAGAAGAAGAGGAGAATTTTAGGAACAATAAAAATGGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGTAATAGTAATAAAAGGAAAAGAGGACGGACGGTGAAGACGAGCGAAGAGGTGGAGAGCCAAAGAATGACGCATATTGCGGTGGAGAGAAATCGAAGGAAGCAGATGAATGAACATCTCCGCGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCCTCCATAATCGGCGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAGCTTCTCCAGTGTCTAGAATCGCAAAAACGACGTCGTCTCCTAGGAGAGTCACCACTACAGGCAGGGGACACACCTCCGCCGCAGCAACCGCCATTTCTGCCGCCGGGAGCAGGTAATTTCGGGGGTCACCAAAACGAGGGGCAAATATTGGAAACGACGGCGGAGAGCAAATCGTGCTTAGCTGACGTGGAAGTGAAGGTTTTAGGGTTCGACGCAATGATAAAGATCCTGTCGAGAAGACGACCGGGACAGCTGATTAAAGCCATCGCCGCCCTCGAAGATCTTCAGCTCAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCCTTCAACGTCAAGATAGCAAGCGAGTCAAGATTCACAGCAGAGGATATAGCGAGCTCGGTTCAGCAGATATTCGGTTTTATTCATGCGAACACCGGCATGTGA 1158 50.26 MEKDDNYSNEAPMPPSFSSHHHHQHDLYNNQDQFMRSRPFETSADNATGILTYFPANPLPPPPLQSVTSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPAGIDPVYFLKFPVLNNERAEEAAAGEEEAAEMGGRIVGELEEEENFRNNKNGNNNNNNNNNNNNNNGNSNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGESPLQAGDTPPPQQPPFLPPGAGNFGGHQNEGQILETTAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12276560 12284104 + Cp4.1LG03g18420.1 Cpe03g01591 467308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01591 385 MobiDBLite consensus disorder prediction 1 30 - -
Cpe03g01591 385 ProSiteProfiles ACT domain profile. 311 385 IPR002912 -
Cpe03g01591 385 Gene3D - 176 251 IPR036638 GO:0046983
Cpe03g01591 385 CDD ACT_UUR-ACR-like 311 375 - -
Cpe03g01591 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 255 IPR036638 GO:0046983
Cpe03g01591 385 SMART finulus 191 242 IPR011598 GO:0046983
Cpe03g01591 385 MobiDBLite consensus disorder prediction 148 170 - -
Cpe03g01591 385 MobiDBLite consensus disorder prediction 255 283 - -
Cpe03g01591 385 PANTHER TRANSCRIPTION FACTOR FAMA 51 384 IPR044283 GO:0003700|GO:0010052
Cpe03g01591 385 PANTHER TRANSCRIPTION FACTOR FAMA 51 384 - -
Cpe03g01591 385 Pfam Helix-loop-helix DNA-binding domain 186 237 IPR011598 GO:0046983
Cpe03g01591 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 236 IPR011598 GO:0046983
Cpe03g01591 385 MobiDBLite consensus disorder prediction 145 188 - -
Cpe03g01591 385 MobiDBLite consensus disorder prediction 174 188 - -
Cpe03g01591 385 CDD bHLH_AtFAMA_like 188 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01591 Cpe-Chr3:12276560 Cpe03g01841 Cpe-Chr3:13743147 1.94E-54 dispersed
Cpe12g00066 Cpe-Chr12:390882 Cpe03g01591 Cpe-Chr3:12276560 9.85E-13 dispersed
Cpe15g00206 Cpe-Chr15:1706960 Cpe03g01591 Cpe-Chr3:12276560 6.28E-19 dispersed
Cpe03g01591 Cpe-Chr3:12276560 Cpe08g00243 Cpe-Chr8:1599539 1.16E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49276 PF00010 HLH 8.00E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01591 - - cpep:111790068 643.654