Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g01591 | ATGGAGAAGGACGATAACTACTCGAACGAAGCTCCTATGCCGCCAAGCTTCTCCAGCCACCACCACCACCAACACGATCTCTACAACAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAACGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCTACCTCCTCCGCCGCTGCAATCGGTAACTTCTCCGGACAAGCTCAGCTTCGCTGAGGTTATGCAGTTTGCCGACTTCGGTCCGAAGCTCAGCCTCAACCGGTTCGACGAGGATGACGAACCAGCCGGGATTGACCCAGTCTACTTCTTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCCGGAGAGGAGGAAGCGGCGGAGATGGGAGGCAGAATTGTAGGGGAGTTAGAAGAAGAGGAGAATTTTAGGAACAATAAAAATGGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGTAATAGTAATAAAAGGAAAAGAGGACGGACGGTGAAGACGAGCGAAGAGGTGGAGAGCCAAAGAATGACGCATATTGCGGTGGAGAGAAATCGAAGGAAGCAGATGAATGAACATCTCCGCGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCCTCCATAATCGGCGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAGCTTCTCCAGTGTCTAGAATCGCAAAAACGACGTCGTCTCCTAGGAGAGTCACCACTACAGGCAGGGGACACACCTCCGCCGCAGCAACCGCCATTTCTGCCGCCGGGAGCAGGTAATTTCGGGGGTCACCAAAACGAGGGGCAAATATTGGAAACGACGGCGGAGAGCAAATCGTGCTTAGCTGACGTGGAAGTGAAGGTTTTAGGGTTCGACGCAATGATAAAGATCCTGTCGAGAAGACGACCGGGACAGCTGATTAAAGCCATCGCCGCCCTCGAAGATCTTCAGCTCAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCCTTCAACGTCAAGATAGCAAGCGAGTCAAGATTCACAGCAGAGGATATAGCGAGCTCGGTTCAGCAGATATTCGGTTTTATTCATGCGAACACCGGCATGTGA | 1158 | 50.26 | MEKDDNYSNEAPMPPSFSSHHHHQHDLYNNQDQFMRSRPFETSADNATGILTYFPANPLPPPPLQSVTSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPAGIDPVYFLKFPVLNNERAEEAAAGEEEAAEMGGRIVGELEEEENFRNNKNGNNNNNNNNNNNNNNGNSNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGESPLQAGDTPPPQQPPFLPPGAGNFGGHQNEGQILETTAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 12276560 | 12284104 | + | Cp4.1LG03g18420.1 | Cpe03g01591 | 467308 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g01591 | 385 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cpe03g01591 | 385 | ProSiteProfiles | ACT domain profile. | 311 | 385 | IPR002912 | - | |
Cpe03g01591 | 385 | Gene3D | - | 176 | 251 | IPR036638 | GO:0046983 | |
Cpe03g01591 | 385 | CDD | ACT_UUR-ACR-like | 311 | 375 | - | - | |
Cpe03g01591 | 385 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 185 | 255 | IPR036638 | GO:0046983 | |
Cpe03g01591 | 385 | SMART | finulus | 191 | 242 | IPR011598 | GO:0046983 | |
Cpe03g01591 | 385 | MobiDBLite | consensus disorder prediction | 148 | 170 | - | - | |
Cpe03g01591 | 385 | MobiDBLite | consensus disorder prediction | 255 | 283 | - | - | |
Cpe03g01591 | 385 | PANTHER | TRANSCRIPTION FACTOR FAMA | 51 | 384 | IPR044283 | GO:0003700|GO:0010052 | |
Cpe03g01591 | 385 | PANTHER | TRANSCRIPTION FACTOR FAMA | 51 | 384 | - | - | |
Cpe03g01591 | 385 | Pfam | Helix-loop-helix DNA-binding domain | 186 | 237 | IPR011598 | GO:0046983 | |
Cpe03g01591 | 385 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 185 | 236 | IPR011598 | GO:0046983 | |
Cpe03g01591 | 385 | MobiDBLite | consensus disorder prediction | 145 | 188 | - | - | |
Cpe03g01591 | 385 | MobiDBLite | consensus disorder prediction | 174 | 188 | - | - | |
Cpe03g01591 | 385 | CDD | bHLH_AtFAMA_like | 188 | 256 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01591 | Cpe-Chr3:12276560 | Cpe03g01841 | Cpe-Chr3:13743147 | 1.94E-54 | dispersed | |
Cpe12g00066 | Cpe-Chr12:390882 | Cpe03g01591 | Cpe-Chr3:12276560 | 9.85E-13 | dispersed | |
Cpe15g00206 | Cpe-Chr15:1706960 | Cpe03g01591 | Cpe-Chr3:12276560 | 6.28E-19 | dispersed | |
Cpe03g01591 | Cpe-Chr3:12276560 | Cpe08g00243 | Cpe-Chr8:1599539 | 1.16E-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49276 | PF00010 | HLH | 8.00E-10 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g01591 | - | - | cpep:111790068 | 643.654 |