Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01593 ATGCTCTCTGGGTTTTCACAGGAACCGGCAGGAATGTACTCTGCCATTCCGGCGCTGCCGATGGACGGCGGCGGCGGCGGCGGCAAGTTTCAGGGTTCTCTAGACGGAACGAATCTTCCTGGAGATGCTTGTTTGGTTCTCACGTCGGATCCCAAACCACGCCTCCGATGGACGGCGGAGCTCCATGAGCGATTCGTCGACGCCGTCACTCAGCTCGGCGGCGCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGCCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTTGGGAAGCAATCGTTCAAGGAATCGACGGAGAACTCGAAGGACGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCATCATCGCCATCATCGAAAATAATAGCTCGAGATTTAAACGATAGTTTCCAAGTCACTGAGGCGTTACGAGCACAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTTGAGGTGCAGCGTCGACTTCAACTTCGCATTGAAGCACAAGGAAAATACTTGCAGTCGATACTCGAGCGGGCGTGTCGAGCATTGAGCGATCAGGCTGCAGCATCTGCTGGACTCGAAGCTGTACGAGAAGAGCTCTCTGAACTTGCAATGAAAGTAGGCAATGAGTCTAAAGAGATGGCACCCTTGGAGGCTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCCAAAGGCTCCTACGGTTATGCCTCGAGTAGGCGATTGCTCGATGGATAGCTGCTTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTACCACCGGAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGGCGCTCGAGGGCAATGCTCGACACGATGTCGAATGGATGATGAGATGA 945 51.43 MLSGFSQEPAGMYSAIPALPMDGGGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGADKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSKIIARDLNDSFQVTEALRAQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILERACRALSDQAAASAGLEAVREELSELAMKVGNESKEMAPLEAQKVLPFSELAAALENPKAPTVMPRVGDCSMDSCLTSAGSPVSPIGVGSTTTGMKRPRPVFSHGDSMALEGNARHDVEWMMR 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12298519 12302320 + Cp4.1LG03g18020.1 Cpe03g01593 467310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01593 314 PANTHER PROTEIN PHR1-LIKE 2 12 313 - -
Cpe03g01593 314 MobiDBLite consensus disorder prediction 277 299 - -
Cpe03g01593 314 SUPERFAMILY Homeodomain-like 52 109 IPR009057 -
Cpe03g01593 314 Coils Coil 152 172 - -
Cpe03g01593 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 109 IPR017930 -
Cpe03g01593 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 107 IPR006447 GO:0003677
Cpe03g01593 314 MobiDBLite consensus disorder prediction 117 139 - -
Cpe03g01593 314 Pfam Myb-like DNA-binding domain 55 105 IPR001005 -
Cpe03g01593 314 Pfam MYB-CC type transfactor, LHEQLE motif 150 195 IPR025756 -
Cpe03g01593 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 313 IPR044848 GO:0003700
Cpe03g01593 314 Coils Coil 207 227 - -
Cpe03g01593 314 Gene3D - 51 110 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01593 Cpe08g00397 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01347 Cpe-Chr2:11918335 Cpe03g01593 Cpe-Chr3:12298519 8.79E-49 dispersed
Cpe03g00928 Cpe-Chr3:6377956 Cpe03g01593 Cpe-Chr3:12298519 1.33E-61 dispersed
Cpe03g01593 Cpe-Chr3:12298519 Cpe15g00910 Cpe-Chr15:8713480 3.45E-66 dispersed
Cpe03g01593 Cpe-Chr3:12298519 Cpe08g00397 Cpe-Chr8:2528331 1.02E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49277 PF00249 Myb_DNA-binding 3.10E-07 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01593 - - csv:101213244 537.339