Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01594 ATGGTGAGCTTTATTTCAGCTGTATCACTCTTTTTGAGATTCTCCTGCTCTGGATTTTCTCACATTCTCTCTCTGTCTCTCACAGATGAAGATTCCAATGGAAGCATCGATCGCGAAGAACTCAAGAAATGCTTACAGCAGCTGCAAATGCATATGACCGAGGACGAAGTTGAGGATCTTTTCCACTCTTGTGACATTGATGGAAGTTCTGGAATACAGTTCAACGAGTTTATCGTTCTTCTATGTCTCATTTATCTCCTCAAGGACCAGCATTCGCCCACCAAATCAAAGCTGGGTTCACCTCAACTTGAAGCAACTTTTGACACCATAATCCAAGCTTTCATATTTCTTGATAAAAATGGTGATGGCAATCTCAACAAGAAAGAAATGGTCAAGGCTCTGAACGAGGCTTCTCCATTCGAGAGATCCCCTGCACGCATTACAAAGACTAGATTTCGTATTCCTCCCTTCATTAAAGATTCTCCGTTTTCGTTTAACAAATCGTTCTAG 510 41.37 MVSFISAVSLFLRFSCSGFSHILSLSLTDEDSNGSIDREELKKCLQQLQMHMTEDEVEDLFHSCDIDGSSGIQFNEFIVLLCLIYLLKDQHSPTKSKLGSPQLEATFDTIIQAFIFLDKNGDGNLNKKEMVKALNEASPFERSPARITKTRFRIPPFIKDSPFSFNKSF 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12304742 12305902 + Cp4.1LG03g18050.1 Cpe03g01594 467311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01594 169 PANTHER TROPONIN 29 154 - -
Cpe03g01594 169 SUPERFAMILY EF-hand 27 141 IPR011992 -
Cpe03g01594 169 ProSiteProfiles EF-hand calcium-binding domain profile. 52 87 IPR002048 GO:0005509
Cpe03g01594 169 Pfam EF-hand domain pair 33 81 IPR002048 GO:0005509
Cpe03g01594 169 PANTHER CALCIUM-BINDING PROTEIN CML22-RELATED 29 154 - -
Cpe03g01594 169 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Cpe03g01594 169 SMART efh_1 109 137 IPR002048 GO:0005509
Cpe03g01594 169 SMART efh_1 56 84 IPR002048 GO:0005509
Cpe03g01594 169 SMART efh_1 20 48 IPR002048 GO:0005509
Cpe03g01594 169 Gene3D - 25 153 - -
Cpe03g01594 169 ProSiteProfiles EF-hand calcium-binding domain profile. 29 51 IPR002048 GO:0005509
Cpe03g01594 169 ProSitePatterns EF-hand calcium-binding domain. 29 41 IPR018247 -
Cpe03g01594 169 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Cpe03g01594 169 CDD EFh 29 81 IPR002048 GO:0005509
Cpe03g01594 169 Pfam EF hand 112 130 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01594 K13448 CML; calcium-binding protein CML - csv:101213966 239.965
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01594 Cpe08g00398 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01594 Cpe-Chr3:12304742 Cpe08g00845 Cpe-Chr8:6700042 1.28E-43 dispersed
Cpe03g01594 Cpe-Chr3:12304742 Cpe08g00398 Cpe-Chr8:2535043 1.44E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g895 . . . . . . . . . . . Cma14g01895 Car06g01066 Car14g01697 Sed12g0379 Cpe08g00398 Cpe03g01594 Bhi01g00233 Tan10g0519 Cmetu06g0638 . . . . . . . . . . . . . Cone7ag0391 . Lsi05g01843 . . Cme06g00380 . . . . . . . . . Cmo06g01252 Cmo14g01947 . . . . . . . . . . . . . Cla05g00347 Cam05g0377 Cec05g0382 Cco05g0382 Clacu05g0371 Cmu05g0356 Cre05g0420 . Csa03g01094 Chy06g00363 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002695 1 8 1 3 1 0 3 0 1 1 0 0 3 2 2 3 0 4 3 0 2 2 2 2 2 1 1 3 4 2 57