Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01595 ATGGCTTGTGAAGCTGTACAACTGTGGACATTTAATGGATTAGTGGCTGCGTTTCTTGATCTTGGTATAGCTTTTCTTTTATTATGTGCAACGAGTCTTGTTTTCTTTACATCCAAATTTCTGGCGCTGTTTGGGTCATGTCTGCCTTGCCCTTGTGATGGACTATTTGGGAACCTTGGTAGTGATCACTGCTTCCAAAAGTTGCTAGTGGATTGTTCGTCCAAAAGAATATCTTCAGTCCTACATTCAACTAGAGAAAAGTTCCCATTGGATTCCATGTGGGATCAAGAGCCAAAATGTTGTTTTAAGTCGATGTCGGTGCACGAGAGGAATGCGAAGGAGGCGTGTGTTGAATTCGAAGGTGAAGCATCAGGTGATTCCTGGTTTAAAACCAGATCACCTCGAGGTATGATTTATGGAGACGTTCTCAATGTCAACGAATCGCATTATAAATGCGGTGTGGGTGGCAGGAAGATTGCATCAGTGTCTCCGAATGACGTTTTTCAGTCGGATGTGGAACTGGAAGACCTTTGTCATTCTCCTTCAAGCTTCTGTGGATTTGGGGATAACAATAACGAGGATGGCTTCTTTTCTGTTGATACTGGAGATGAAGGGGAGGCTTCATTAGACAACAGCAATCAATATAAAGTATTTCCCGATCTCGAACTAGATGATTCTTATGATGAGAAAATATGCGCAGAGATGTATGGAGCATCTGCTGAAGAGGCTAGGAACAACTGCAGAGGGGAGTTATGCTTGGATGGTAATGAGAGTGATAGAATCAAACTATTGGCACAATCACTCGAAGAAGAGCAGAAAGCTCGCGCTACCTTGTACCTGGAGCTCGAGAAAGAGAGAAGCGCTGCTGCCACTGCTGCTGATGAGGCCATGGCTATGATATTACGTCTTCAAGAGGAGAAGGCTAAAATAGAAATGGAGGCTAGGCAATACCAGAGGTTGATAGAGGAGAAAACTGCTTATGATGCTGAGGAAATGAGTATTCTTAAAGAAATTCTAGTGAGGAGAGAGCAGGAAATGCATTTCCTGAAGAAGGAAGTTGAAGCTTTTAGGAAAAGTTTCTTTGATAATGATGGAGTGAGTGTTGATATGCTTGACTCTGAATTTACACCCCCATGGCTTGAATGCATCAATGGATCCATTACAGACAAGCAATCTCATGAGTTACCATCAGTGGAGTCACGAAACTTAACTTTTGAGTTCGGGGAAGAGTCCCCTTCGATTCAAGCGGATGAATTCGCTGATGCTGCGAAAGCTAGTGGCGTGTTGTTGCACCAAGTTGCCGATAATTTCGAGCTTAGTGAAGAGATTGACAACGAGTTACAAGGAAAGGGCATGGTGGAAGATAAAAATGTATACATTGTACCAGGAGAAGTAAATGAACTGGAGCCATATCCGAAAAGCAATGTGTCGAATGGCCTAGATAAGGTCGAGCAGTGCACAGAATTGACTGCTGATGAACAAGAAAAAGTTTACGACGATTCATTTGACGGGTTGGCATTTGCGGAAATAGCTCTTCCTTGTGTTGAGTATAATTTGGAAAAGCATGGGAACCATCAAAAGCAGTGGACAAGAGATTTCAAATCTGTGAATGATACAGATGCCTGTCCTCATGATATTCATGTCATTGAAGATGAAGCTAGAATGCCCAATGAAGCAAGTGCTAATGCTCGTAAAGAAACATCGGTTAATGGTAGCTCGAGTATTCCAGTTAATTGTGATAGTTCATCCTTCAGTTCGTTGCAGAATGGACTAGACATCACGAGAAGCAGCTCAGATGCCACTGGAAGATTTCCACCAATGGCTCGTTCTCGAAGCAATTCCTTGCGTTCTGAATTGCGTAGAAACTCGATGTCTGCTGTCGATTATGAAAGGTCGAAAATCGGCAATGAAGTTGAGTGGCTTAGAGGAAGGTTGAAGATTGTTCAAGAGGAAAGAGAAAAGCTCAAGTTATCTGTGGAGCAAAAAGAGAAGGAGAACAATCAATTGCAACTTTTAGAAAACATAACGAAGGATGTGTCAAAGAAACGTTGCTGGCGAAGCTCATCCTTAAGCATTCACAGAAGCAGCTAG 2091 42.61 MACEAVQLWTFNGLVAAFLDLGIAFLLLCATSLVFFTSKFLALFGSCLPCPCDGLFGNLGSDHCFQKLLVDCSSKRISSVLHSTREKFPLDSMWDQEPKCCFKSMSVHERNAKEACVEFEGEASGDSWFKTRSPRGMIYGDVLNVNESHYKCGVGGRKIASVSPNDVFQSDVELEDLCHSPSSFCGFGDNNNEDGFFSVDTGDEGEASLDNSNQYKVFPDLELDDSYDEKICAEMYGASAEEARNNCRGELCLDGNESDRIKLLAQSLEEEQKARATLYLELEKERSAAATAADEAMAMILRLQEEKAKIEMEARQYQRLIEEKTAYDAEEMSILKEILVRREQEMHFLKKEVEAFRKSFFDNDGVSVDMLDSEFTPPWLECINGSITDKQSHELPSVESRNLTFEFGEESPSIQADEFADAAKASGVLLHQVADNFELSEEIDNELQGKGMVEDKNVYIVPGEVNELEPYPKSNVSNGLDKVEQCTELTADEQEKVYDDSFDGLAFAEIALPCVEYNLEKHGNHQKQWTRDFKSVNDTDACPHDIHVIEDEARMPNEASANARKETSVNGSSSIPVNCDSSSFSSLQNGLDITRSSSDATGRFPPMARSRSNSLRSELRRNSMSAVDYERSKIGNEVEWLRGRLKIVQEEREKLKLSVEQKEKENNQLQLLENITKDVSKKRCWRSSSLSIHRSS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12306680 12311005 + Cp4.1LG03g17980.1 Cpe03g01595 467312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01595 696 PANTHER BNAANNG28530D PROTEIN 3 680 - -
Cpe03g01595 696 MobiDBLite consensus disorder prediction 595 621 - -
Cpe03g01595 696 Coils Coil 293 323 - -
Cpe03g01595 696 PANTHER BNAANNG28530D PROTEIN 3 680 - -
Cpe03g01595 696 Coils Coil 645 682 - -
Cpe03g01595 696 MobiDBLite consensus disorder prediction 595 622 - -
Cpe03g01595 696 ProSiteProfiles GTD-binding domain profile. 259 357 IPR007656 -
Cpe03g01595 696 Pfam Zein-binding 264 353 IPR007656 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01595 - - - cpep:111791180 1354.35
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01595 Cpe08g00399 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01595 Cpe-Chr3:12306680 Cpe12g01079 Cpe-Chr12:8965126 2.51E-49 dispersed
Cpe03g01595 Cpe-Chr3:12306680 Cpe08g00399 Cpe-Chr8:2538766 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006891 1 2 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 1 1 1 0 8 1 0 37