Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01596 ATGGGGAAGAAAGTTAAGAAGAAGAACAACCGAGCCCCTCTGAAAGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCGAAGCAGCCCAACGGTGGAGATTGCTGTTGAGGATGTATCAGTTGTTAAGGAGAGAAGCCAATGCCAGCACCTTGATAAATGCTTTAATTTCAAAGAGTTATCATCGAAACTTGCGTCCTCGGAACCTATTAGCTGTGAAGATTGTCAAGACAGTTCAGCTGATAGAAGGGGGAGTAAGGGGAAGGCTAAACATGGGAAGAAAAAAGGGGGAACTTCTGTGGATGTAAAACCTGATGCCAAAGCAATTTGGATTTGTTTGCAGTGTGGCCATTATGCCTGTGGAGGTATTGGACTTCCTACCAACTCTCAGATTCATGCCGTTCGACATGTCAGGCAAACTCGACACCCTGTGGTGATTCAGTTTGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAACAAATTACTTCCAGTAGAGAAAACTGATGAGAATGGTGAACAAAATGATGGCTTGTCTAACGTGGTGAAATTAATTAGGGATCAATCGATCAAAGCCTCGCCTGTGGACATTGAGAACACATGGCATTCAAGCAGTGAAGTTACAGCTGCAACTAAATCAGAATGTTCAATGTTAAGTGATCTGGACGGAAGAAATCATTATGTTGTAAAAGGATTGATTAATCTAGGTAACACTTGTTTTTTCAATTCAATCCTTCAAAATATCTTGGCCATTGATATGTTGAGAGATCATTTTATGAAATTGGAAGAATGTGTTGGACCTCTAACTATAGCCTTGAAGAAGATCTTTATAGAAGCAAGAATGGAAGGTAGAATGAAAGGTTCAATAAACCCAAGATCGGTTTTTGGCTGCATCTCTTCCAAAGCCCCTCAGTTCAAAGGATATGAGCAACACGACAGTCATGAATTGCTTCATGCCCTGCTTGATGGATTGTCTACTGAAGAGCTGTCTTCGAGGAAGATGACAAAGTCTAAGGAAGAGAGAATGTCTGGAAATCCCACTCCTTCTTTTGTTGATGAGATGTTTGGGGGGAAAATATCAAGTGCTGTATGTTGCAAAGAATGTGGCCACACATCAACAGTTTATGAACCATTTCTCGATCTTTCTCTTCCCGTTCCAATGAAGAAACCTCTGGCCAAAAAGGTCCAACCAGTCTCTCGGGCAAAGAAGACAAAAGTGCCACCTAAGAGTAGTGGAAAGACGATTCGTAAAACTGGCAAGCCTTCAGATGTTGTACCAGTTCAAATTGCCTCGCTCCCATCATCCAGTAATGAGCTTTCCCTTGCATCAGAGGCCAGCGCCACCAGTAGTACAACTACCATCACGGAGAAGACTTTAAGTTCTCAGAATGTCTCAGATGTTAAAGAGCCTGAAAAAGAAGTTTTGATTGAGAATGGAGGAGAATGTGCTTCAGATAATTTGACGTGGATGGATTTCCTTGGACCAGAACTAACTGTCGAAAATTGTGATATTTCCACTACTCAGGAGTCTAAAAATAAAGTCGAAGTATTTATCAGTGACGATTCACAAAGCATCTCTGGGTCGGGTATGCAGGTGTCAACCCTTCACAATGAACCCAATCAAGGACCAGATTTTTCTTCAGTGAATTCGTGGGATGAATCCCCTTTACAGGTTCAAGCCTCTGAAGTTTTGCTGCTCCCTTACAAGGAAGAGAGCTCCACTGCTGAAGTAGCAAAAGCAGATGATCAGGCTTCCTCATCAATTTTGGGATGTGCTCAAGATGATTTTGAGGGATTTGGCCTTGGTGATATGTTTGATGAGCCTGAAATCCCCATAGGGCCCATTGCGAGGCCCTCCGCCACAAATGAAGTTGCAGAGAGTAGTTTTGTTAGCGAGTCTGAGCCCGAGGAAGTCGATAATACTAATGCTCCCGTCTCTGTGGAGAGTTGTCTAACTTATTTCACGAAGCCAGAACTTCTGTCCAACGAAAATGGATTTAACTGTGAGAAATGCTCAAAAAGGCTACAACAACAAAGGTTGGAAATGAAGAAGCAATCAAAAGTTGCTCGCAAAGCTGTAGCAAATGGATATCAAACTGATGTAGGGGGTGATATATCTAGTTTCAACGTGGACTCTTCAGTTGAAGTAAAGAATCAAAGAAATATGAACTTAATAAATGGTTCTATCAGTCATAGTAGCAGCGAAAGCTCGAATTTGAAAGAAAATGCAGATTGCTCCGGTCGAGATTGCACAAAACCTGTCAATTACCAGAAAGGCAAGATGGATTCTCTTGTTTTGAATGAAGATGAAGCTAAGGTTGACATAGATATGAATCCTGGCCTAGCATATTCTTCAGGTTGTAATAACACCAGCAATCAAGAGAATTCGGATGATAAATCCAGGTCTTATCTTTCCAACGATGATCCTAAAGGCACGGGACTTGCAAAAACTAATATTGAGCCCTTGAGTTCACAAATATCTGCCGAGAACCAACCAGAAAAAAGTGAGGATTGTGAGATGAATTCTGATTCAACAATTGTGTATGTGAAAAGAGATGCAACAAAGAGGTTTCTCATTCACAAGGCCCCTCCTATCTTGACAATTCATATAAAGAGGTTCAGTCCAGATGCTCGGGGTCGTTATAGTAAATTGAACGGCCACGTCAAATTCAAGGAAACAATTGATCTCAAACCATACATGGATACTAGGTGTGCAGATAGGGACAAGTGTAAATATCGGTTGGTCGGGGTCGTGGAGCACTCGGGATCTATGAGAGGAGGCCATTATGTTGCATACGTTAGAGGGGGCAACAGGAAGAGGAGGAATGGGGAAGCTGAGGAAGAGGCTTCTGTTTGGTATTATGCAAGTGACGCCTGCGTAAACGAGGTTAGCCTGGACCGAGTTCTTGGCTGTGAGGCATACATCCTATTTTATGAGATAACAGGTCAAATCTTTGGCTAA 2970 42.53 MGKKVKKKNNRAPLKEKRVSSSSPRKVPQRSSPTVEIAVEDVSVVKERSQCQHLDKCFNFKELSSKLASSEPISCEDCQDSSADRRGSKGKAKHGKKKGGTSVDVKPDAKAIWICLQCGHYACGGIGLPTNSQIHAVRHVRQTRHPVVIQFENPQLRWCFSCNKLLPVEKTDENGEQNDGLSNVVKLIRDQSIKASPVDIENTWHSSSEVTAATKSECSMLSDLDGRNHYVVKGLINLGNTCFFNSILQNILAIDMLRDHFMKLEECVGPLTIALKKIFIEARMEGRMKGSINPRSVFGCISSKAPQFKGYEQHDSHELLHALLDGLSTEELSSRKMTKSKEERMSGNPTPSFVDEMFGGKISSAVCCKECGHTSTVYEPFLDLSLPVPMKKPLAKKVQPVSRAKKTKVPPKSSGKTIRKTGKPSDVVPVQIASLPSSSNELSLASEASATSSTTTITEKTLSSQNVSDVKEPEKEVLIENGGECASDNLTWMDFLGPELTVENCDISTTQESKNKVEVFISDDSQSISGSGMQVSTLHNEPNQGPDFSSVNSWDESPLQVQASEVLLLPYKEESSTAEVAKADDQASSSILGCAQDDFEGFGLGDMFDEPEIPIGPIARPSATNEVAESSFVSESEPEEVDNTNAPVSVESCLTYFTKPELLSNENGFNCEKCSKRLQQQRLEMKKQSKVARKAVANGYQTDVGGDISSFNVDSSVEVKNQRNMNLINGSISHSSSESSNLKENADCSGRDCTKPVNYQKGKMDSLVLNEDEAKVDIDMNPGLAYSSGCNNTSNQENSDDKSRSYLSNDDPKGTGLAKTNIEPLSSQISAENQPEKSEDCEMNSDSTIVYVKRDATKRFLIHKAPPILTIHIKRFSPDARGRYSKLNGHVKFKETIDLKPYMDTRCADRDKCKYRLVGVVEHSGSMRGGHYVAYVRGGNRKRRNGEAEEEASVWYYASDACVNEVSLDRVLGCEAYILFYEITGQIFG 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12311767 12316980 + Cp4.1LG03g17970.1 Cpe03g01596 467313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01596 989 Pfam Zn-finger in ubiquitin-hydrolases and other protein 75 166 IPR001607 GO:0008270
Cpe03g01596 989 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 915 932 IPR018200 GO:0004843|GO:0006511
Cpe03g01596 989 Gene3D Cysteine proteinases 561 694 - -
Cpe03g01596 989 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270
Cpe03g01596 989 MobiDBLite consensus disorder prediction 397 470 - -
Cpe03g01596 989 MobiDBLite consensus disorder prediction 74 103 - -
Cpe03g01596 989 MobiDBLite consensus disorder prediction 787 802 - -
Cpe03g01596 989 SUPERFAMILY Cysteine proteinases 232 982 IPR038765 -
Cpe03g01596 989 MobiDBLite consensus disorder prediction 729 747 - -
Cpe03g01596 989 Gene3D Cysteine proteinases 724 984 - -
Cpe03g01596 989 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 982 - -
Cpe03g01596 989 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 982 - -
Cpe03g01596 989 MobiDBLite consensus disorder prediction 431 468 - -
Cpe03g01596 989 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 234 249 IPR018200 GO:0004843|GO:0006511
Cpe03g01596 989 Gene3D Cysteine proteinases 218 428 - -
Cpe03g01596 989 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 233 984 IPR028889 -
Cpe03g01596 989 MobiDBLite consensus disorder prediction 398 413 - -
Cpe03g01596 989 Pfam Ubiquitin carboxyl-terminal hydrolase 234 981 IPR001394 GO:0004843|GO:0016579
Cpe03g01596 989 SUPERFAMILY RING/U-box 49 165 - -
Cpe03g01596 989 MobiDBLite consensus disorder prediction 729 749 - -
Cpe03g01596 989 CDD Peptidase_C19K 825 982 - -
Cpe03g01596 989 MobiDBLite consensus disorder prediction 787 819 - -
Cpe03g01596 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 189 IPR013083 -
Cpe03g01596 989 ProSiteProfiles Zinc finger UBP-type profile. 49 191 IPR001607 GO:0008270
Cpe03g01596 989 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01596 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1580.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01596 Cpe08g00400 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01596 Cpe-Chr3:12311767 Cpe05g00767 Cpe-Chr5:4748206 2.94E-09 dispersed
Cpe03g01596 Cpe-Chr3:12311767 Cpe08g00400 Cpe-Chr8:2546244 1.44E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35