Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01603 ATGGCTCGGAGTTCACAAGTACCAAAATTTGGTAAGTGGGATGATGGGGATGATGTCCCGTATACAGCCTATTTTGACAATGCCACAAAGGCTAAATTAGTGAGGATAAATATGAATGATCCTTCTCTTGACCAAGTGGAGATTTTAGACACAGTGAGGTCAAACTATGAGCAACACAGAATCAAAGAAGGTGTTCTTGTGAGGAGGCAAACCGAGTCTCCATTGCACCACGATGCCCCGGAAATGCCTGGTCGGGATTCTAATGGTATAAAGTCAGCGAAGAGTCGGGGTCAACAAGCATCAAGGCCAAAGCATTCACAAGAAGATTCGGGCTTGGAAGATGGTAACATGAAGAAACCTGTTGATTCCCCTTTGGACCATCAATCAATAGGTCGGGTAAGCTTTAACTCGCCTCGTCATCAACGTCAGGCTAACTCTCCACATCATCAACGCGAGGGCAATAACACGACCAGTAATTCATCGAAAAGGACTACGAGAAATGGCGTAGGTTCTGACTGCAGCATAGAAAATTCACCTCTTCATCCACGGCAGCATCCAAGGAATGAAGCAAAAACTGTCGTACCATCTTCGCCATTACGAGAAAGAAGGGGTGCAGGTTCACCTAAAGGAGGTAGTCATGATGGTTTAGCTCCCTCGACTCCCGGAAGATCACGTCAACGATCTGTTCCTCGGGGCAATGAAACGCCGGATCGTAGTGCCACTGTCCCAAAATTTGGTGACTGGGATGAGAGCGATCCAACATCATCTGAGAACTACAGTGGCATTTTCACCAGAGTGCGCGAGGAGAGACAATCTGAGGACGGAAGTTTGCCGAGATGTGGCTGTTTTCCATGGGGAAATGATTGGTCGGTGTCACGGTGA 882 47.51 MARSSQVPKFGKWDDGDDVPYTAYFDNATKAKLVRINMNDPSLDQVEILDTVRSNYEQHRIKEGVLVRRQTESPLHHDAPEMPGRDSNGIKSAKSRGQQASRPKHSQEDSGLEDGNMKKPVDSPLDHQSIGRVSFNSPRHQRQANSPHHQREGNNTTSNSSKRTTRNGVGSDCSIENSPLHPRQHPRNEAKTVVPSSPLRERRGAGSPKGGSHDGLAPSTPGRSRQRSVPRGNETPDRSATVPKFGDWDESDPTSSENYSGIFTRVREERQSEDGSLPRCGCFPWGNDWSVSR 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12350695 12354558 + Cp4.1LG03g18010.1 Cpe03g01603 467320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01603 293 MobiDBLite consensus disorder prediction 63 279 - -
Cpe03g01603 293 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 275 IPR040387 -
Cpe03g01603 293 MobiDBLite consensus disorder prediction 219 235 - -
Cpe03g01603 293 MobiDBLite consensus disorder prediction 101 121 - -
Cpe03g01603 293 MobiDBLite consensus disorder prediction 63 84 - -
Cpe03g01603 293 MobiDBLite consensus disorder prediction 129 178 - -
Cpe03g01603 293 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 236 272 IPR008700 -
Cpe03g01603 293 PANTHER RPM1-INTERACTING PROTEIN 4 3 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01603 K13456 RIN4; RPM1-interacting protein 4 - csv:101211635 443.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01603 Cpe-Chr3:12350695 Cpe12g01088 Cpe-Chr12:9039767 9.75E-06 dispersed
Cpe03g01603 Cpe-Chr3:12350695 Cpe05g00124 Cpe-Chr5:640818 3.62E-09 wgd
Cpe03g01603 Cpe-Chr3:12350695 Cpe08g00406 Cpe-Chr8:2597305 1.29E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g946 . . . . . . . . . . . . . Car14g01704 Sed02g1520 . Cpe03g01603 Bhi01g00211 Tan10g0505 Cmetu06g1239 . . . . . . . . . . . . . Cone7ag0404 . Lsi05g01853 . . Cme06g00373 . . Bda11g00342 . . Bpe13g00864 . Bma06g01276 . . Cmo14g01956 . . . . . . . . . . . . . Cla05g00337 Cam05g0370 Cec05g0374 Cco05g0375 Clacu05g0364 Cmu05g0349 Cre05g0413 . Csa03g01084 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003340 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 9 1 1 49