Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01656 | ATGGCGGGCTTAGATTTGGGCTCTGCTTCTAACTTTGTCCATCAACTTCAGCACCGTTCCGTGGATCTCCACTTGCAGCGGCCGCCGGACGGAGACGACGGTCCCGACCAGTTCCACGGCCTTGATGATGAGCACCAACCGAACTCTGGTGGCGAAATCGTGGCCCGGCGGTCGAGAGGTCGACCGCCGGGGTCTAAAAATAAACCGAAACCACCGGTTATTATTACCAGAGAAAGCGCTAACACCCTTCGTGCACACATCTTGGAAGTCAACACCGGTTGCGATGTGTTTGACTCGGTGGCTACTTATGCCCGGAAACGCCAACGGGGGATCTGCATCTTGAGCGGCACCGGCGTCGTCACCAACGTTACTTTACGGCAACCCGCGTCCGGCGGCGCCGTTCTCACGCTTCCCGGAAGGTTTGAGATATTGTCTTTGTCGGGATCGTTTTTGCCGCCGCCGGCTCCGCCAGGAGCGACGAGTTTGAGTATCTTCCTTGGCGGTGGACAAGGGCAGATTGTGGGAGGGAATGTTGCTGGCTCTTTGATTGCTTCTGGACCGGTGACTGTTATTGTGTCGTCGTTTACGAATGTTGCGTACGAGAGGCTGCCGTTGGATGAGGAGGAACCGTCCAACGGTGGTGGTGGTGGTGGAGGGAGCCTTAGCAACCCGTTTCCCGACCCGTCGGCGGGGTTGCCGTTCCTTAATCTGCCATTGAACATGCCGGGGAATCAAAATCAGCTGCCGGTGGAGGGATGGAACTCCGGTGGAGGAGCATCTTATTGA | 786 | 57.12 | MAGLDLGSASNFVHQLQHRSVDLHLQRPPDGDDGPDQFHGLDDEHQPNSGGEIVARRSRGRPPGSKNKPKPPVIITRESANTLRAHILEVNTGCDVFDSVATYARKRQRGICILSGTGVVTNVTLRQPASGGAVLTLPGRFEILSLSGSFLPPPAPPGATSLSIFLGGGQGQIVGGNVAGSLIASGPVTVIVSSFTNVAYERLPLDEEEPSNGGGGGGGSLSNPFPDPSAGLPFLNLPLNMPGNQNQLPVEGWNSGGGASY | 261 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12655423 | 12656347 | - | Cp4.1LG03g17420.1 | Cpe03g01656 | 467373 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01656 | 261 | MobiDBLite | consensus disorder prediction | 24 | 50 | - | - | |
| Cpe03g01656 | 261 | CDD | DUF296 | 84 | 195 | IPR005175 | - | |
| Cpe03g01656 | 261 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 1 | 256 | - | - | |
| Cpe03g01656 | 261 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 80 | 208 | - | - | |
| Cpe03g01656 | 261 | Gene3D | - | 83 | 211 | - | - | |
| Cpe03g01656 | 261 | MobiDBLite | consensus disorder prediction | 24 | 73 | - | - | |
| Cpe03g01656 | 261 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 1 | 256 | IPR014476 | GO:0003680 | |
| Cpe03g01656 | 261 | ProSiteProfiles | PPC domain profile profile. | 80 | 217 | IPR005175 | - | |
| Cpe03g01656 | 261 | MobiDBLite | consensus disorder prediction | 206 | 233 | - | - | |
| Cpe03g01656 | 261 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 84 | 197 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g02551 | Cpe-Chr1:20834550 | Cpe03g01656 | Cpe-Chr3:12655423 | 1.14E-53 | dispersed | |
| Cpe03g01656 | Cpe-Chr3:12655423 | Cpe15g00220 | Cpe-Chr15:1903902 | 1.58E-90 | dispersed | |
| Cpe12g00049 | Cpe-Chr12:266568 | Cpe03g01656 | Cpe-Chr3:12655423 | 9.83E-103 | wgd | |
| Cpe17g00317 | Cpe-Chr17:2159794 | Cpe03g01656 | Cpe-Chr3:12655423 | 2.06E-66 | wgd | |
| Cpe17g00291 | Cpe-Chr17:1974212 | Cpe03g01656 | Cpe-Chr3:12655423 | 1.62E-107 | wgd | |
| Cpe03g01656 | Cpe-Chr3:12655423 | Cpe05g00183 | Cpe-Chr5:963252 | 2.45E-91 | wgd | |
| Cpe03g01656 | Cpe-Chr3:12655423 | Cpe08g00456 | Cpe-Chr8:2934971 | 1.19E-72 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01656 | - | - | csv:101220959 | 412.92 |