Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01668 | ATGGCAGTGATTCATAGCCGTTGGATCCTTATTGTTCTTGTTGTTCTTAATTTTCCGGCCGCCATTTTTAGTTATTCCGAAAAAGAATTAAAAAATTGGTGTAGCCAAACACCATATCCAGCTCCATGCGAGCAATTTATCAAAGCCAAAGCCACCGCCAAACATTCCCCAATCGCCACTAAATCCCATTTCCTTAAACTCTTGGTCGAAACGGCACTCGACGGCGCCGTTTCGGCCCAAAAAACCGCGCTGTCTCTCGGCCCAAAATGCCACAATGGCCGAGAAAAATCAGCATTGACCGACTGCGTTGACCTCTACAATCAAATCATTTCCCGTCTCAACCGCTCCGCCGACCGCTGCTCCTCCGTCGACGCCCAGACTTGGCTCAGCGCCTCCCTCACCGCCCTCGACACCTGCCGGAACAGCCTCCAGGAGCTCGGGGTTTCGGCCTTCGGCTACCCATTGACGAGCAATAATGTTTCCAAGCTCATTAGCGATGGGTTGTCTGTGAATAAGCCAACGTCACCCCAGGGGTTTGAGCCAACTATGACGGAGGGGTTTCCGACGTGGGTTAGGCCCGGTGACCGGAAACTGCTGCAGTCGGGGTCTCCGAGTGCGGACGTGGTGGTGGCGAAGGACGGGTCTGGGAATTTTAAGACGGTGAAGGAGGCGGTCGCCGCTGCGAAAGGCGGCGGGCGATTTGTAATATATGTGAAGGCGGGGGTTTATAGTGAAAACCTTGAGATTAATGCTAAGAATCTTATGTTGATCGGCGACGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGCGGTTTCACCACGTTTAGATCCGCCACCGTTGGTATGTCTCTATCTCTCCTTATAAGCTTTTCTAAAATCTTTTTATAA | 900 | 51.56 | MAVIHSRWILIVLVVLNFPAAIFSYSEKELKNWCSQTPYPAPCEQFIKAKATAKHSPIATKSHFLKLLVETALDGAVSAQKTALSLGPKCHNGREKSALTDCVDLYNQIISRLNRSADRCSSVDAQTWLSASLTALDTCRNSLQELGVSAFGYPLTSNNVSKLISDGLSVNKPTSPQGFEPTMTEGFPTWVRPGDRKLLQSGSPSADVVVAKDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENLEINAKNLMLIGDGIGKTVITGSRSVGGGFTTFRSATVGMSLSLLISFSKIFL | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12742450 | 12743349 | - | Cp4.1LG03g17300.1 | Cpe03g01668 | 467385 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01668 | 299 | SMART | PMEI_2 | 25 | 170 | IPR006501 | GO:0004857 | |
| Cpe03g01668 | 299 | CDD | PMEI-like_3 | 33 | 172 | - | - | |
| Cpe03g01668 | 299 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 28 | 171 | IPR035513 | - | |
| Cpe03g01668 | 299 | PANTHER | PECTINESTERASE | 11 | 285 | - | - | |
| Cpe03g01668 | 299 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 24 | 172 | IPR035513 | - | |
| Cpe03g01668 | 299 | Gene3D | - | 202 | 292 | IPR012334 | - | |
| Cpe03g01668 | 299 | Pfam | Plant invertase/pectin methylesterase inhibitor | 30 | 167 | IPR006501 | GO:0004857 | |
| Cpe03g01668 | 299 | SUPERFAMILY | Pectin lyase-like | 204 | 285 | IPR011050 | - | |
| Cpe03g01668 | 299 | PANTHER | PECTINESTERASE | 11 | 285 | - | - | |
| Cpe03g01668 | 299 | Pfam | Pectinesterase | 207 | 287 | IPR000070 | GO:0030599|GO:0042545 | |
| Cpe03g01668 | 299 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 10 | 159 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01668 | Cpe-Chr3:12742450 | Cpe05g00731 | Cpe-Chr5:4483697 | 5.84E-75 | dispersed | |
| Cpe19g00974 | Cpe-Chr19:6861170 | Cpe03g01668 | Cpe-Chr3:12742450 | 1.13E-36 | transposed | |
| Cpe03g01668 | Cpe-Chr3:12742450 | Cpe08g00473 | Cpe-Chr8:3029761 | 1.27E-153 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01668 | K01051 | - | csv:101217552 | 433.335 |