Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01668 ATGGCAGTGATTCATAGCCGTTGGATCCTTATTGTTCTTGTTGTTCTTAATTTTCCGGCCGCCATTTTTAGTTATTCCGAAAAAGAATTAAAAAATTGGTGTAGCCAAACACCATATCCAGCTCCATGCGAGCAATTTATCAAAGCCAAAGCCACCGCCAAACATTCCCCAATCGCCACTAAATCCCATTTCCTTAAACTCTTGGTCGAAACGGCACTCGACGGCGCCGTTTCGGCCCAAAAAACCGCGCTGTCTCTCGGCCCAAAATGCCACAATGGCCGAGAAAAATCAGCATTGACCGACTGCGTTGACCTCTACAATCAAATCATTTCCCGTCTCAACCGCTCCGCCGACCGCTGCTCCTCCGTCGACGCCCAGACTTGGCTCAGCGCCTCCCTCACCGCCCTCGACACCTGCCGGAACAGCCTCCAGGAGCTCGGGGTTTCGGCCTTCGGCTACCCATTGACGAGCAATAATGTTTCCAAGCTCATTAGCGATGGGTTGTCTGTGAATAAGCCAACGTCACCCCAGGGGTTTGAGCCAACTATGACGGAGGGGTTTCCGACGTGGGTTAGGCCCGGTGACCGGAAACTGCTGCAGTCGGGGTCTCCGAGTGCGGACGTGGTGGTGGCGAAGGACGGGTCTGGGAATTTTAAGACGGTGAAGGAGGCGGTCGCCGCTGCGAAAGGCGGCGGGCGATTTGTAATATATGTGAAGGCGGGGGTTTATAGTGAAAACCTTGAGATTAATGCTAAGAATCTTATGTTGATCGGCGACGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGCGGTTTCACCACGTTTAGATCCGCCACCGTTGGTATGTCTCTATCTCTCCTTATAAGCTTTTCTAAAATCTTTTTATAA 900 51.56 MAVIHSRWILIVLVVLNFPAAIFSYSEKELKNWCSQTPYPAPCEQFIKAKATAKHSPIATKSHFLKLLVETALDGAVSAQKTALSLGPKCHNGREKSALTDCVDLYNQIISRLNRSADRCSSVDAQTWLSASLTALDTCRNSLQELGVSAFGYPLTSNNVSKLISDGLSVNKPTSPQGFEPTMTEGFPTWVRPGDRKLLQSGSPSADVVVAKDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENLEINAKNLMLIGDGIGKTVITGSRSVGGGFTTFRSATVGMSLSLLISFSKIFL 299
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 12742450 12743349 - Cp4.1LG03g17300.1 Cpe03g01668 467385
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01668 299 SMART PMEI_2 25 170 IPR006501 GO:0004857
Cpe03g01668 299 CDD PMEI-like_3 33 172 - -
Cpe03g01668 299 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 171 IPR035513 -
Cpe03g01668 299 PANTHER PECTINESTERASE 11 285 - -
Cpe03g01668 299 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 172 IPR035513 -
Cpe03g01668 299 Gene3D - 202 292 IPR012334 -
Cpe03g01668 299 Pfam Plant invertase/pectin methylesterase inhibitor 30 167 IPR006501 GO:0004857
Cpe03g01668 299 SUPERFAMILY Pectin lyase-like 204 285 IPR011050 -
Cpe03g01668 299 PANTHER PECTINESTERASE 11 285 - -
Cpe03g01668 299 Pfam Pectinesterase 207 287 IPR000070 GO:0030599|GO:0042545
Cpe03g01668 299 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 159 IPR006501 GO:0004857
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01668 Cpe-Chr3:12742450 Cpe05g00731 Cpe-Chr5:4483697 5.84E-75 dispersed
Cpe19g00974 Cpe-Chr19:6861170 Cpe03g01668 Cpe-Chr3:12742450 1.13E-36 transposed
Cpe03g01668 Cpe-Chr3:12742450 Cpe08g00473 Cpe-Chr8:3029761 1.27E-153 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01668 K01051 - csv:101217552 433.335