Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01680 ATGGAGGAGAGAGAAGCCATAAATACAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTACCACGTAGCTCCGAGAACCGAGAACCCGCCGCCGGCTAGCGGCGGCGGTGGCGGTTCGCCAACCGTCGCCGCCTCGCCGGTCAGTGTGGGGCTACCCGGAAGTGAAACCACAGGGAAAAAGAAGCGGGGGAGACCTAGAAAGTACGGTCCAGATGGATCGGTAACCATGGCATTGTCACCATTGCCGCTTTCTTCCTCAGCTCCGGGGGCCGGCGGCTTCTCCATCACGAAGCGGGGGAAGGGCCGGCTCGGCGGCTCTGAATTCAAGCACCACAAGAAAATGGGAATGGAATATATAGGATTAGGTATGTTTGATGTTCATGCCAATATTTTAAAAGTAGATGAGCTAAATAGGCATGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGTCCTCGAGCGATCTGTATTCTTTCTGCGAATGGTGTAATTTCGAATGTCACTCTCCGGCAGCCCGATTCTTCAGGTGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCATTGTCTGGATCGTTCATGCCTACTGAAAATCAAGGATCGAGAAGCAGGTCAGGTGGGATGAGTGTCTCCTTGGCGAGCCCAGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTGCTCATAGCTGCAGGCCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGTAGCCAACAACAGGAGCCGAAAGTAAAGAAACAGAAGCCTGAATCAGTACCAGCTGCAGCCCCTGTTGCAGCCCCGACCACAACACCAGCCACCACCGTGCCGACTTCCAATGCCGATACAGACGACAGTTTAAACGGAAACGGTCAACCAAATCCCGGGTCCCTAAAACCGGCCAGTTTTTCTCCTTCGGCTTTCCAGAGAGACAATTGGGGTGCCAATGCTGCCGTGCGTTCTTCCTTGCAGGAGCCGAGAAATTCGCCCACCGACATCAATATATCGCTCCCTGGCTAA 1038 52.79 MEEREAINTGVTVIGAEAPSAYHVAPRTENPPPASGGGGGSPTVAASPVSVGLPGSETTGKKKRGRPRKYGPDGSVTMALSPLPLSSSAPGAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGLGMFDVHANILKVDELNRHDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGSRSRSGGMSVSLASPDGRVVGGGVAGLLIAAGPVQVVVGSFLPTSSQQQEPKVKKQKPESVPAAAPVAAPTTTPATTVPTSNADTDDSLNGNGQPNPGSLKPASFSPSAFQRDNWGANAAVRSSLQEPRNSPTDINISLPG 345
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 12807604 12812823 - Cp4.1LG03g17150.1 Cpe03g01680 467397
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01680 345 MobiDBLite consensus disorder prediction 249 345 - -
Cpe03g01680 345 MobiDBLite consensus disorder prediction 1 110 - -
Cpe03g01680 345 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 344 - -
Cpe03g01680 345 MobiDBLite consensus disorder prediction 274 345 - -
Cpe03g01680 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 245 IPR005175 -
Cpe03g01680 345 ProSiteProfiles PPC domain profile profile. 122 267 IPR005175 -
Cpe03g01680 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 344 IPR039605 GO:0003680
Cpe03g01680 345 CDD DUF296 142 245 IPR005175 -
Cpe03g01680 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 251 - -
Cpe03g01680 345 Gene3D - 138 261 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01680 Cpe-Chr3:12807604 Cpe09g00137 Cpe-Chr9:808107 8.69E-50 dispersed
Cpe13g00201 Cpe-Chr13:1547397 Cpe03g01680 Cpe-Chr3:12807604 6.14E-17 wgd
Cpe14g00855 Cpe-Chr14:7073358 Cpe03g01680 Cpe-Chr3:12807604 4.39E-37 wgd
Cpe03g01680 Cpe-Chr3:12807604 Cpe05g00182 Cpe-Chr5:955937 2.25E-25 wgd
Cpe03g01680 Cpe-Chr3:12807604 Cpe08g00488 Cpe-Chr8:3132250 9.26E-159 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01680 - - csv:101212918 476.478