Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01680 | ATGGAGGAGAGAGAAGCCATAAATACAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTACCACGTAGCTCCGAGAACCGAGAACCCGCCGCCGGCTAGCGGCGGCGGTGGCGGTTCGCCAACCGTCGCCGCCTCGCCGGTCAGTGTGGGGCTACCCGGAAGTGAAACCACAGGGAAAAAGAAGCGGGGGAGACCTAGAAAGTACGGTCCAGATGGATCGGTAACCATGGCATTGTCACCATTGCCGCTTTCTTCCTCAGCTCCGGGGGCCGGCGGCTTCTCCATCACGAAGCGGGGGAAGGGCCGGCTCGGCGGCTCTGAATTCAAGCACCACAAGAAAATGGGAATGGAATATATAGGATTAGGTATGTTTGATGTTCATGCCAATATTTTAAAAGTAGATGAGCTAAATAGGCATGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGTCCTCGAGCGATCTGTATTCTTTCTGCGAATGGTGTAATTTCGAATGTCACTCTCCGGCAGCCCGATTCTTCAGGTGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCATTGTCTGGATCGTTCATGCCTACTGAAAATCAAGGATCGAGAAGCAGGTCAGGTGGGATGAGTGTCTCCTTGGCGAGCCCAGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTGCTCATAGCTGCAGGCCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGTAGCCAACAACAGGAGCCGAAAGTAAAGAAACAGAAGCCTGAATCAGTACCAGCTGCAGCCCCTGTTGCAGCCCCGACCACAACACCAGCCACCACCGTGCCGACTTCCAATGCCGATACAGACGACAGTTTAAACGGAAACGGTCAACCAAATCCCGGGTCCCTAAAACCGGCCAGTTTTTCTCCTTCGGCTTTCCAGAGAGACAATTGGGGTGCCAATGCTGCCGTGCGTTCTTCCTTGCAGGAGCCGAGAAATTCGCCCACCGACATCAATATATCGCTCCCTGGCTAA | 1038 | 52.79 | MEEREAINTGVTVIGAEAPSAYHVAPRTENPPPASGGGGGSPTVAASPVSVGLPGSETTGKKKRGRPRKYGPDGSVTMALSPLPLSSSAPGAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGLGMFDVHANILKVDELNRHDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGSRSRSGGMSVSLASPDGRVVGGGVAGLLIAAGPVQVVVGSFLPTSSQQQEPKVKKQKPESVPAAAPVAAPTTTPATTVPTSNADTDDSLNGNGQPNPGSLKPASFSPSAFQRDNWGANAAVRSSLQEPRNSPTDINISLPG | 345 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12807604 | 12812823 | - | Cp4.1LG03g17150.1 | Cpe03g01680 | 467397 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01680 | 345 | MobiDBLite | consensus disorder prediction | 249 | 345 | - | - | |
| Cpe03g01680 | 345 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Cpe03g01680 | 345 | PANTHER | AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN | 1 | 344 | - | - | |
| Cpe03g01680 | 345 | MobiDBLite | consensus disorder prediction | 274 | 345 | - | - | |
| Cpe03g01680 | 345 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 141 | 245 | IPR005175 | - | |
| Cpe03g01680 | 345 | ProSiteProfiles | PPC domain profile profile. | 122 | 267 | IPR005175 | - | |
| Cpe03g01680 | 345 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 1 | 344 | IPR039605 | GO:0003680 | |
| Cpe03g01680 | 345 | CDD | DUF296 | 142 | 245 | IPR005175 | - | |
| Cpe03g01680 | 345 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 141 | 251 | - | - | |
| Cpe03g01680 | 345 | Gene3D | - | 138 | 261 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01680 | Cpe-Chr3:12807604 | Cpe09g00137 | Cpe-Chr9:808107 | 8.69E-50 | dispersed | |
| Cpe13g00201 | Cpe-Chr13:1547397 | Cpe03g01680 | Cpe-Chr3:12807604 | 6.14E-17 | wgd | |
| Cpe14g00855 | Cpe-Chr14:7073358 | Cpe03g01680 | Cpe-Chr3:12807604 | 4.39E-37 | wgd | |
| Cpe03g01680 | Cpe-Chr3:12807604 | Cpe05g00182 | Cpe-Chr5:955937 | 2.25E-25 | wgd | |
| Cpe03g01680 | Cpe-Chr3:12807604 | Cpe08g00488 | Cpe-Chr8:3132250 | 9.26E-159 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01680 | - | - | csv:101212918 | 476.478 |