Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01684 ATGAAAGAACGGCAAGAAAGCAAGGCCGAGATGAGCTCGAGGCACGGCGGTGGAGGTTGCAAGGAGGGCAATGGTGGTAGTAGCAGCAATGGCAGCGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTACACCGGAGTGTATATTTGCACCTTACTTTGACTCTGAACAAGGCACGACTCATTTTGCAGCCGTGCACAAAGTGTTCGGAGCTAGTAATGTGTCGAAGCTGCTTCTGCATATTCCTGAACACAAGCGCCTCGACGCAGCTATAACTATATGCTACGAGGCACAAGCTCGTGTTAGAGAGCCAGTTTTTGGTTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGCTGCGAGGTTGCAAGTAGAGCTTGCATACTTGCAAGCGTACCTAGCAGCATCTGAGCTTTCAAGAACAGCACCGCATCCACAGGCACAGCCACAAGATCTGGTCAAGCCAACAATACCCTCAATTGTAAGCCTTCCATTAGATTGCTCTTCTTTGCCTTCTGCTGCATCAGATCTTTCACTACTTATCGATCCTGTGGAGCAAGCTTCGCCGGCAAAGTTGCAGTCTCCATTGGAATTCTGTCAAATTAGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAATTGTCCAAAAACAACTCTCCACGATGCAACGCATCGGTGCCTCGCTATTTCCGTACGTCCCTAAAGGAGCCTAA 729 49.38 MKERQESKAEMSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELAYLQAYLAASELSRTAPHPQAQPQDLVKPTIPSIVSLPLDCSSLPSAASDLSLLIDPVEQASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPKGA 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12825261 12826077 + Cp4.1LG03g17200.1 Cpe03g01684 467401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01684 242 ProSiteProfiles LOB domain profile. 34 136 IPR004883 -
Cpe03g01684 242 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 11 197 - -
Cpe03g01684 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 197 - -
Cpe03g01684 242 Pfam Lateral organ boundaries (LOB) domain 35 133 IPR004883 -
Cpe03g01684 242 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01684 Cpe-Chr3:12825261 Cpe17g00315 Cpe-Chr17:2137602 9.88E-61 dispersed
Cpe12g00024 Cpe-Chr12:118526 Cpe03g01684 Cpe-Chr3:12825261 4.51E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49281 PF03195 LOB 9.60E-37 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01684 K21994 - csv:101216934 337.806