Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01699 ATGAGAAAATTAAATATATATGCAGAAATGGTGAGAGGGAAAACTGAGATGAGGCGAATCGAGAATGCGACGAGTCGTCAAGTTACGTTCTCGAAGCGTCGGAACGGGTTGCTGAAGAAGGCGTTTGAGCTCTCCGTTCTTTGTGATGCTGAACTCGCTCTTATCATTTTCTCTTCTACTGGAAAGCTTTATGAATTTGCTAGCTCCAGCTTGCAGGCCACGGTGGGGCGATATCTAAGGCATACCAAAGCAACTCATCGTCTTCAACCTCCATCTCATCAACACGACTTACAACCGGTTCAGAATGAGGCTACAAGTCTGTTGGACGAGATCGAGTCACTCGAGGTTTCGAAGAGGAAATTGTTGGGAGAAGGCTTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAAAAGCAGCTAGAGAGGAGCTTGGCTCATGTTAAAGCTAGAAAGTACGAGGTTTACAAGGAACAGATTGAACAACTAAAAGAAAAGGAGAAATATTTGGCGGCTGAAAATGCAAAGCTTGCTAAAAAGATGCCATATTTAAATATTTATCTAATAAATTAA 573 41.88 MRKLNIYAEMVRGKTEMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSTGKLYEFASSSLQATVGRYLRHTKATHRLQPPSHQHDLQPVQNEATSLLDEIESLEVSKRKLLGEGLGSSSYEELQQIEKQLERSLAHVKARKYEVYKEQIEQLKEKEKYLAAENAKLAKKMPYLNIYLIN 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12926741 12929765 - Cp4.1LG03g16950.1 Cpe03g01699 467416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01699 190 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Cpe03g01699 190 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Cpe03g01699 190 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Cpe03g01699 190 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Cpe03g01699 190 SUPERFAMILY SRF-like 12 92 IPR036879 GO:0003677|GO:0046983
Cpe03g01699 190 Pfam K-box region 92 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe03g01699 190 Gene3D - 22 93 IPR036879 GO:0003677|GO:0046983
Cpe03g01699 190 ProSiteProfiles K-box domain profile. 97 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe03g01699 190 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Cpe03g01699 190 Coils Coil 131 180 - -
Cpe03g01699 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Cpe03g01699 190 PANTHER MADS-BOX PROTEIN SOC1 10 181 - -
Cpe03g01699 190 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Cpe03g01699 190 PANTHER MADS BOX PROTEIN 10 181 - -
Cpe03g01699 190 CDD MADS_MEF2_like 12 86 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01699 Cpe-Chr3:12926741 Cpe05g00296 Cpe-Chr5:1658238 7.35E-56 dispersed
Cpe06g01008 Cpe-Chr6:10224939 Cpe03g01699 Cpe-Chr3:12926741 1.42E-33 dispersed
Cpe10g01202 Cpe-Chr10:8964083 Cpe03g01699 Cpe-Chr3:12926741 1.26E-40 dispersed
Cpe17g00324 Cpe-Chr17:2200090 Cpe03g01699 Cpe-Chr3:12926741 1.63E-73 transposed
Cpe13g00187 Cpe-Chr13:1468337 Cpe03g01699 Cpe-Chr3:12926741 1.14E-63 wgd
Cpe03g01699 Cpe-Chr3:12926741 Cpe08g00501 Cpe-Chr8:3241950 3.42E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49283 PF01486 K-box 1.50E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01699 - - csv:101209501 270.011