Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g01710 | ATGTTTCCGAACTTGATTGCGACGGCGACCACCACCGACGTAATCTCCGGCGGAATGGGAGGAACCCGAAACGGCGCTCTTCAATTGGTTACTTGGGTTGAGCATTCTGAATACGATGAAAGCCAAATCCATGAGCTGTACCGACCCCTCGTCCGCTCCGGCCTTGGGTTTGGCGCGCGACGGTGGATCGCCACCCTCCAGCGCCAATCTGAAGCCCTCGCCACCCTCCTCTCCTCCCCATCTGACCATTCCGGTAAATATTGGAGTTTTCTCTTTTTTTCCCTTTTTCGGTTGAGAGTTATAATGAATTGTTTTGTTTATATAGGGATATCCGCCGACGGACGGCGGAACATGGTGAAGCTAGCACAGCGGATGACAGCAAATTTCTGCACAGGAGTATGCGCATCAACGGTGTACAAATGGAACAAGCTGAACACGGGCAATAACAATGTTGGAGAGGATGTGAAAGTGATGACAAGGAAGAGCGTGGAGGATCCAGGGGAGCCGCCAGGGACGGTGCTGAGTGCAGCAACGTCGGTGTGGGTGGCGGCGACAGCAGAGAGAGTGTTTGAGTTTCTTCGTGATGAGCGGCTGAGGAGCGAATGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAAATGCTCCATATCCCCAAAGCCCATCACCATCACCATGCCAACGCCGTCTCTCTCCTCCGTGCCACCTCTCTAAATCCAAACCAGAGCAGTATGCTGATTCTGCAAGAGACCTGTTCCGATTCATCTGGGTCGCTTGTAGTGTACGCGCCGGTGGATATTCCGGCAATGCAGGTGGTGATGAACGGCGGAGACTCGGCCTACGTGGCTCTACTGCCGTCGGGGTTCGCGGTGGTACCGGCGGCGGAGGATTGTGGCGGTGGGAGCCTGTTGACGGTGGCGTTTCAGATATTGGTGAACAGTTTACCGACGGATAAGCTGACGGTGGAGTCGGTGGAGACAGTGAATAATCTGATATCGTGTACGGTGCAGAAAATTAAAACCGCTCTCCGGTGTCACGAGCTTTCCACGTGA | 1050 | 54.48 | MFPNLIATATTTDVISGGMGGTRNGALQLVTWVEHSEYDESQIHELYRPLVRSGLGFGARRWIATLQRQSEALATLLSSPSDHSGKYWSFLFFSLFRLRVIMNCFVYIGISADGRRNMVKLAQRMTANFCTGVCASTVYKWNKLNTGNNNVGEDVKVMTRKSVEDPGEPPGTVLSAATSVWVAATAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKAHHHHHANAVSLLRATSLNPNQSSMLILQETCSDSSGSLVVYAPVDIPAMQVVMNGGDSAYVALLPSGFAVVPAAEDCGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKTALRCHELST | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12998014 | 12999731 | + | Cp4.1LG03g17000.1 | Cpe03g01710 | 467427 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g01710 | 349 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 | 1 | 30 | - | - | |
| Cpe03g01710 | 349 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 | 30 | 344 | - | - | |
| Cpe03g01710 | 349 | Pfam | START domain | 30 | 71 | IPR002913 | GO:0008289 | |
| Cpe03g01710 | 349 | ProSiteProfiles | START domain profile. | 30 | 75 | IPR002913 | GO:0008289 | |
| Cpe03g01710 | 349 | SUPERFAMILY | Bet v1-like | 114 | 332 | - | - | |
| Cpe03g01710 | 349 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 1 | 30 | IPR042160 | - | |
| Cpe03g01710 | 349 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 30 | 344 | IPR042160 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g01710 | Cpe17g00350 | CCT | |
| Cpe03g01710 | Cpe12g00015 | CCT | |
| Cpe03g01710 | Cpe12g00015 | ECH | |
| Cpe03g01710 | Cpe17g00350 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g01710 | Cpe-Chr3:12998014 | Cpe12g00015 | Cpe-Chr12:67744 | 1.81E-155 | dispersed | |
| Cpe14g00118 | Cpe-Chr14:638199 | Cpe03g01710 | Cpe-Chr3:12998014 | 9.26E-141 | wgd | |
| Cpe03g01710 | Cpe-Chr3:12998014 | Cpe09g00102 | Cpe-Chr9:569079 | 5.14E-07 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g01710 | K09338 | - | gmx:100783614 | 416.387 |