Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g01800 | ATGGAGTCTCTTGATACTGCTGCCGAGAAAGATCCAACCGGTCGATACGTTCGGTTCGATGAAATCGTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTTGACGAAATTGATGGCATTGAAGTTGCCTGGAACCAAGTAAGGATTGATGGTTTCCTGCAGTCTCCTGAGGATTTGGAAAAGTTGTACTCCGAAGTACTTTTACTTAAATCATTAAGACATGAGAACATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATTATTACTGAGCTCTTCACATCTGGGAATTTGAGACAATACCGTAAGAAGCACAAACATGTTAATATGAAGGCCATAAAGAATTGGGCGCGACAGATTCTCCGAGGCTTGGACTATCTTCACAGTCACAATCCTCCCATTATTCATAGAGATTTGAAAGGTGATAATATTTTTATTAATGGGAATCATGGAGAAGTTAAGATTGGAGATCTTGGATTAGCTATTATTTTGAAGCAGCCTACTGCTCGAAGTGGTATTAAGCCTGCTTCCCTTGATAAGGTGAGTGATCCACTAACCAAGGAGTTCATCAATAAATGTTTGGTTCCGGTGCAAGATAGGTTGTCTGCAAAAGAGCTTCTTAAAGATTCATTCCTTCAAGTTGAGAACCCCAAGGAATCAACGCATGATCTCCTACAGTTACCTAACCATGTTCCTAAATCAATAAATTTGCCAAAGAGTGAACCTATTGACATTGACCTCAAACAACATTCTATGACCACCAGTGCTGAAAGCAATAGTGGGAGTCCACTGTTTCCAGACATGGAATTCCAGACTATGAACAAGAACAATGAGTTTAGGTTACGTGGAAATAAAACCGACGACAACTCGGTGGTGTTAACCTTGCGTATTGCAGACTCGAACGGTCGAGTGAGGAATATACATTTTACGTTTTATCTTGATTCTGATACTGCACTATCAGTGGCAGCTGAAATGGCTGAACAATTGGAGTTGGAAAATCATGATGTTGATTTCGTAGCTGAACTTATTGACTTATTGATAACAAAACTGGTACCTGGTTGGAAGCCGATGTTTGATTATTCCTTACATGGAGAGTTGAGTCTTTGTGGCGGCCCCCCTACCCTTTTAAGTGCCAAATCATCTATTGCATCTCCATGGGATTCAATGTTAAATGGGGTGGATGATGGTCTGCAATCTAATGGAGATGGTGGCTGGGCTGATGATATTCCCGGTAGTCAAATTTTTGATACTTGCCCTTCTTCTCCCAGCTTCGCTAAGTTTGAGGACCTGAGTTCTCATACTTCATTCGCATCAGAGTTATTGGTCAAAGACTGTTCGACCAAAAGTGCTAAGGTGATGGATTGCTCGAATACTGTTGATGGAAGCTCAAAGGGGTCGAGCTGGTCGGCTGCGGAACTAGAGCTCCAAGGTGCATCAGATGTTGGAAAGTTGAATCCCATGGATTATTTTGTGAAGAACTCAGTGATGTCATTGGCAAATGAAGCAGCAGCTAATGTGATGAGCTTGACAAGCAGTTGCTCTTCGCTATCCTTAACGGACAAGGATCTGGATGCCGAACTGGAGATGGAACTTGATGCTATTGAGAGACATTATCAGCAGCTGGTGGAGGAGCTGTCTCGAATGAGAGAGGAGGCAGTAGAGGCCACCAGAAAGAGATGGATTGCAAAGAAGAAGCTGATTCATTGA | 1728 | 42.3 | MESLDTAAEKDPTGRYVRFDEIVGRGAFKTVYKAFDEIDGIEVAWNQVRIDGFLQSPEDLEKLYSEVLLLKSLRHENIIKFYNSWVDDKKKTVNIITELFTSGNLRQYRKKHKHVNMKAIKNWARQILRGLDYLHSHNPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIILKQPTARSGIKPASLDKVSDPLTKEFINKCLVPVQDRLSAKELLKDSFLQVENPKESTHDLLQLPNHVPKSINLPKSEPIDIDLKQHSMTTSAESNSGSPLFPDMEFQTMNKNNEFRLRGNKTDDNSVVLTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEQLELENHDVDFVAELIDLLITKLVPGWKPMFDYSLHGELSLCGGPPTLLSAKSSIASPWDSMLNGVDDGLQSNGDGGWADDIPGSQIFDTCPSSPSFAKFEDLSSHTSFASELLVKDCSTKSAKVMDCSNTVDGSSKGSSWSAAELELQGASDVGKLNPMDYFVKNSVMSLANEAAANVMSLTSSCSSLSLTDKDLDAELEMELDAIERHYQQLVEELSRMREEAVEATRKRWIAKKKLIH | 575 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13510775 | 13514373 | + | Cp4.1LG03g15970.1 | Cpe03g01800 | 467517 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g01800 | 575 | Pfam | Protein kinase domain | 20 | 175 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe03g01800 | 575 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 181 | - | - | |
Cpe03g01800 | 575 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 300 | 354 | IPR024678 | GO:0004674|GO:0005524 | |
Cpe03g01800 | 575 | SMART | serkin_6 | 17 | 219 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe03g01800 | 575 | CDD | bZIP | 528 | 558 | - | - | |
Cpe03g01800 | 575 | ProSiteProfiles | Protein kinase domain profile. | 17 | 299 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe03g01800 | 575 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 4 | 180 | - | - | |
Cpe03g01800 | 575 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 178 | 573 | - | - | |
Cpe03g01800 | 575 | Coils | Coil | 531 | 565 | - | - | |
Cpe03g01800 | 575 | SUPERFAMILY | Protein kinase-like (PK-like) | 11 | 243 | IPR011009 | - | |
Cpe03g01800 | 575 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 141 | 153 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe03g01800 | 575 | PANTHER | KINASE DOMAIN PROTEIN | 4 | 180 | - | - | |
Cpe03g01800 | 575 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 98 | - | - | |
Cpe03g01800 | 575 | Gene3D | - | 296 | 362 | - | - | |
Cpe03g01800 | 575 | PANTHER | KINASE DOMAIN PROTEIN | 178 | 573 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01800 | Cpe-Chr3:13510775 | Cpe20g00266 | Cpe-Chr20:1491133 | 3.79E-103 | dispersed | |
Cpe03g01800 | Cpe-Chr3:13510775 | Cpe09g01001 | Cpe-Chr9:8877785 | 1.69E-107 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62321 | PF00069 | Pkinase | 9.60E-35 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g01800 | K08867 | - | csv:101204101 | 833.558 |