Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01800 ATGGAGTCTCTTGATACTGCTGCCGAGAAAGATCCAACCGGTCGATACGTTCGGTTCGATGAAATCGTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTTGACGAAATTGATGGCATTGAAGTTGCCTGGAACCAAGTAAGGATTGATGGTTTCCTGCAGTCTCCTGAGGATTTGGAAAAGTTGTACTCCGAAGTACTTTTACTTAAATCATTAAGACATGAGAACATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATTATTACTGAGCTCTTCACATCTGGGAATTTGAGACAATACCGTAAGAAGCACAAACATGTTAATATGAAGGCCATAAAGAATTGGGCGCGACAGATTCTCCGAGGCTTGGACTATCTTCACAGTCACAATCCTCCCATTATTCATAGAGATTTGAAAGGTGATAATATTTTTATTAATGGGAATCATGGAGAAGTTAAGATTGGAGATCTTGGATTAGCTATTATTTTGAAGCAGCCTACTGCTCGAAGTGGTATTAAGCCTGCTTCCCTTGATAAGGTGAGTGATCCACTAACCAAGGAGTTCATCAATAAATGTTTGGTTCCGGTGCAAGATAGGTTGTCTGCAAAAGAGCTTCTTAAAGATTCATTCCTTCAAGTTGAGAACCCCAAGGAATCAACGCATGATCTCCTACAGTTACCTAACCATGTTCCTAAATCAATAAATTTGCCAAAGAGTGAACCTATTGACATTGACCTCAAACAACATTCTATGACCACCAGTGCTGAAAGCAATAGTGGGAGTCCACTGTTTCCAGACATGGAATTCCAGACTATGAACAAGAACAATGAGTTTAGGTTACGTGGAAATAAAACCGACGACAACTCGGTGGTGTTAACCTTGCGTATTGCAGACTCGAACGGTCGAGTGAGGAATATACATTTTACGTTTTATCTTGATTCTGATACTGCACTATCAGTGGCAGCTGAAATGGCTGAACAATTGGAGTTGGAAAATCATGATGTTGATTTCGTAGCTGAACTTATTGACTTATTGATAACAAAACTGGTACCTGGTTGGAAGCCGATGTTTGATTATTCCTTACATGGAGAGTTGAGTCTTTGTGGCGGCCCCCCTACCCTTTTAAGTGCCAAATCATCTATTGCATCTCCATGGGATTCAATGTTAAATGGGGTGGATGATGGTCTGCAATCTAATGGAGATGGTGGCTGGGCTGATGATATTCCCGGTAGTCAAATTTTTGATACTTGCCCTTCTTCTCCCAGCTTCGCTAAGTTTGAGGACCTGAGTTCTCATACTTCATTCGCATCAGAGTTATTGGTCAAAGACTGTTCGACCAAAAGTGCTAAGGTGATGGATTGCTCGAATACTGTTGATGGAAGCTCAAAGGGGTCGAGCTGGTCGGCTGCGGAACTAGAGCTCCAAGGTGCATCAGATGTTGGAAAGTTGAATCCCATGGATTATTTTGTGAAGAACTCAGTGATGTCATTGGCAAATGAAGCAGCAGCTAATGTGATGAGCTTGACAAGCAGTTGCTCTTCGCTATCCTTAACGGACAAGGATCTGGATGCCGAACTGGAGATGGAACTTGATGCTATTGAGAGACATTATCAGCAGCTGGTGGAGGAGCTGTCTCGAATGAGAGAGGAGGCAGTAGAGGCCACCAGAAAGAGATGGATTGCAAAGAAGAAGCTGATTCATTGA 1728 42.3 MESLDTAAEKDPTGRYVRFDEIVGRGAFKTVYKAFDEIDGIEVAWNQVRIDGFLQSPEDLEKLYSEVLLLKSLRHENIIKFYNSWVDDKKKTVNIITELFTSGNLRQYRKKHKHVNMKAIKNWARQILRGLDYLHSHNPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIILKQPTARSGIKPASLDKVSDPLTKEFINKCLVPVQDRLSAKELLKDSFLQVENPKESTHDLLQLPNHVPKSINLPKSEPIDIDLKQHSMTTSAESNSGSPLFPDMEFQTMNKNNEFRLRGNKTDDNSVVLTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEQLELENHDVDFVAELIDLLITKLVPGWKPMFDYSLHGELSLCGGPPTLLSAKSSIASPWDSMLNGVDDGLQSNGDGGWADDIPGSQIFDTCPSSPSFAKFEDLSSHTSFASELLVKDCSTKSAKVMDCSNTVDGSSKGSSWSAAELELQGASDVGKLNPMDYFVKNSVMSLANEAAANVMSLTSSCSSLSLTDKDLDAELEMELDAIERHYQQLVEELSRMREEAVEATRKRWIAKKKLIH 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13510775 13514373 + Cp4.1LG03g15970.1 Cpe03g01800 467517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01800 575 Pfam Protein kinase domain 20 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01800 575 Gene3D Transferase(Phosphotransferase) domain 1 100 181 - -
Cpe03g01800 575 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 300 354 IPR024678 GO:0004674|GO:0005524
Cpe03g01800 575 SMART serkin_6 17 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01800 575 CDD bZIP 528 558 - -
Cpe03g01800 575 ProSiteProfiles Protein kinase domain profile. 17 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01800 575 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 180 - -
Cpe03g01800 575 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 178 573 - -
Cpe03g01800 575 Coils Coil 531 565 - -
Cpe03g01800 575 SUPERFAMILY Protein kinase-like (PK-like) 11 243 IPR011009 -
Cpe03g01800 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cpe03g01800 575 PANTHER KINASE DOMAIN PROTEIN 4 180 - -
Cpe03g01800 575 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Cpe03g01800 575 Gene3D - 296 362 - -
Cpe03g01800 575 PANTHER KINASE DOMAIN PROTEIN 178 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01800 Cpe-Chr3:13510775 Cpe20g00266 Cpe-Chr20:1491133 3.79E-103 dispersed
Cpe03g01800 Cpe-Chr3:13510775 Cpe09g01001 Cpe-Chr9:8877785 1.69E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62321 PF00069 Pkinase 9.60E-35 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01800 K08867 - csv:101204101 833.558