Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01812 ATGAACGTGAAAACTCCGGCGACGAGGACTCGTGTTGGGAAGTACGAGCTCGGCAAAACCCTCGGCGAAGGCACTTTTGCTAAGGTCAAGTTCGCGAAGAATGTTGAGAATGGTGATTATGTCGCCATCAAGATTCTCGACCGGGAACAAGTTCTTCGCCACAAGATGGTCGAGCAGATTAAAAGAGAGATATCGACTCTGAAAGTTATCAAGCATCCGAACGTTGCTAAGATTTATGAGGTTATGGCAAGCAAATCAAAAATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTTTTTGACAAAATAGCCGCAAAGGGAAGGCTCAAAGAGGATGAGGCAAGGAAATATTTCCAGCAACTTATTAATGCTGTAGATTACTGCCATAGTAGAGGAGTGTACCATCGAGATCTGAAGCCTGAAAATCTTCTTTTAGATTCACATGATGTTCTTAAGGTGTCAGATTTTGGATTGAGTGCATTTTCACAGCAAGTACGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACCCCAAACTACGTAGCTCCCGAGGTCTTCAACGATAAAGGTTATGATGGTACATCATCTGATATTTGGTCATGCGGGGTCATTCTCTTTGTTCTTATGGCTGGCTTCTTGCCTTTTGACGAGCCAAATCTGATGTGTTTGTATACGAAAATTTCGAAGGCTGATTTCTGCTTTCCATCATGGTTCTCAAATGGCGCTAAAAAACTTGTTCGCCGCATTCTTGATCCCCACCCTCTTACTCGAATAACGATAGCCGAAATTCAAGAAGATGCATGGTTCAAGAAGGGCTACACACCTGCTCAATTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCTCGAGGGAACATCTTGTGACAGAAAGAAAAGAGAAGCCAATGTCCATGAACGCTTTTGAGCTCATCTCTAGGTCACCTGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGACTGTTACAAAGAGAGAAACCCGTTTTACTTCGCAAAGTCCTGCAAATGAGATCATGTCGAAGATTGAAGAAACGGCGAAACCGATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTACAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTGTTTGAGGTGGCACCTTCCTTGCATATGGTGGAGCTTCGGAAGACGAGTGGCGATACGCTCGAGTTTCACAAGGCATGTCAATCAGTATTCTTAGTTGAAATTGGAAATTCTACAAAAGTTTCTCTTCAGGATTGA 1314 43.84 MNVKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREQVLRHKMVEQIKREISTLKVIKHPNVAKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYTKISKADFCFPSWFSNGAKKLVRRILDPHPLTRITIAEIQEDAWFKKGYTPAQFEVEEDITLDDVDAAFSSSREHLVTERKEKPMSMNAFELISRSPGFSLENLFEKQKTVTKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTSGDTLEFHKACQSVFLVEIGNSTKVSLQD 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13563708 13572460 + Cp4.1LG03g16030.1 Cpe03g01812 467529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01812 437 SUPERFAMILY Protein kinase-like (PK-like) 12 307 IPR011009 -
Cpe03g01812 437 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Cpe03g01812 437 CDD STKc_SnRK3 14 269 - -
Cpe03g01812 437 Gene3D Kinase associated domain 1, KA1 306 427 - -
Cpe03g01812 437 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01812 437 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01812 437 Pfam NAF domain 309 369 IPR004041 GO:0007165
Cpe03g01812 437 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01812 437 PANTHER - 7 420 - -
Cpe03g01812 437 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cpe03g01812 437 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Cpe03g01812 437 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 420 - -
Cpe03g01812 437 CDD CIPK_C 313 419 - -
Cpe03g01812 437 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cpe03g01812 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01812 Cpe08g00617 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01812 Cpe-Chr3:13563708 Cpe20g00539 Cpe-Chr20:3136138 0 dispersed
Cpe03g01812 Cpe-Chr3:13563708 Cpe08g00617 Cpe-Chr8:4069686 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62322 PF00069 Pkinase 8.80E-70 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01812 - - csv:101203531 788.104