Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g01822 | ATGGGCGGGAGAGATGACGAGTTGCGGCTGACTTTGAGTTTAGGGTTGGGAGTTACGACTCGGCCTTCTTTTCAGCCGACTCACATTCACAGGCCATCGAACTCCATGCATAATCACATCCGCAATGGTTCTTGGAAAGAGCTCTTTCAATTTTCTGATCGAAATGCCGATTCTAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTGCCGACTGTCGTGGACGGCGAGGAAGAGTACGGCGTTTCATCTCCGAACAGTACCGTTTCTAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGAGGCGGAGGCGGAGGCTGAGGCTGAGGCCTCGAGAGCCTCGTGCTCGCAAGGGAGCGACAATGAAGACGGCGGAGGCGGCGACGCCTCGAGAAAGAAGCTGAGGCTATCAAAGGAACAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACTCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACGAAACTGAAGCAGACAGAAGTGGATTGCGAGTACTTGAAGAGGTGCTGCGAGAATCTAACAGGGGAGAACAGAAGGCTGCAGAAGGAGGTGCAGGAGTTGAGAGCGCTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCTACCACCCTCACCATGTGTCCTCAGTGTGAGCGTGTGGCAGTTTCCTCATCTTCTTCCACCACCTGCCATCCAGCAGCGGCTGCTGGTGTACAGCGTCCCTCCATGCCCATCAACCCATGGGCGGCGGTGTTGCCGATTGAACGTTGA | 849 | 53.47 | MGGRDDELRLTLSLGLGVTTRPSFQPTHIHRPSNSMHNHIRNGSWKELFQFSDRNADSRSFLRGIDVNRLPTVVDGEEEYGVSSPNSTVSSISGKRSEREAEAEAEAEAEASRASCSQGSDNEDGGGGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTGENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTTCHPAAAAGVQRPSMPINPWAAVLPIER | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13608181 | 13610416 | - | Cp4.1LG03g15670.1 | Cpe03g01822 | 467539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g01822 | 282 | MobiDBLite | consensus disorder prediction | 77 | 133 | - | - | |
Cpe03g01822 | 282 | PANTHER | - | 5 | 277 | - | - | |
Cpe03g01822 | 282 | Pfam | Homeodomain | 132 | 186 | IPR001356 | GO:0003677 | |
Cpe03g01822 | 282 | Gene3D | - | 126 | 193 | - | - | |
Cpe03g01822 | 282 | SUPERFAMILY | Homeodomain-like | 116 | 189 | IPR009057 | - | |
Cpe03g01822 | 282 | SMART | halz | 188 | 231 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe03g01822 | 282 | ProSiteProfiles | 'Homeobox' domain profile. | 128 | 188 | IPR001356 | GO:0003677 | |
Cpe03g01822 | 282 | Pfam | HD-ZIP protein N terminus | 1 | 100 | IPR006712 | GO:0005634 | |
Cpe03g01822 | 282 | SMART | HOX_1 | 130 | 192 | IPR001356 | GO:0003677 | |
Cpe03g01822 | 282 | MobiDBLite | consensus disorder prediction | 95 | 109 | - | - | |
Cpe03g01822 | 282 | ProSitePatterns | 'Homeobox' domain signature. | 163 | 186 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe03g01822 | 282 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 | 5 | 277 | - | - | |
Cpe03g01822 | 282 | Pfam | Homeobox associated leucine zipper | 188 | 222 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe03g01822 | 282 | CDD | homeodomain | 132 | 189 | IPR001356 | GO:0003677 | |
Cpe03g01822 | 282 | Coils | Coil | 201 | 221 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g01822 | Cpe12g00050 | CCT | |
Cpe03g01822 | Cpe08g00624 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01822 | Cpe-Chr3:13608181 | Cpe14g00930 | Cpe-Chr14:7818059 | 6.47E-103 | dispersed | |
Cpe03g01822 | Cpe-Chr3:13608181 | Cpe08g00624 | Cpe-Chr8:4126877 | 2.79E-142 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49295 | PF04618 | HD-ZIP_N | 3.20E-28 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g01822 | K09338 | - | csv:101222132 | 427.557 |