Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01822 ATGGGCGGGAGAGATGACGAGTTGCGGCTGACTTTGAGTTTAGGGTTGGGAGTTACGACTCGGCCTTCTTTTCAGCCGACTCACATTCACAGGCCATCGAACTCCATGCATAATCACATCCGCAATGGTTCTTGGAAAGAGCTCTTTCAATTTTCTGATCGAAATGCCGATTCTAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTGCCGACTGTCGTGGACGGCGAGGAAGAGTACGGCGTTTCATCTCCGAACAGTACCGTTTCTAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGAGGCGGAGGCGGAGGCTGAGGCTGAGGCCTCGAGAGCCTCGTGCTCGCAAGGGAGCGACAATGAAGACGGCGGAGGCGGCGACGCCTCGAGAAAGAAGCTGAGGCTATCAAAGGAACAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACTCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACGAAACTGAAGCAGACAGAAGTGGATTGCGAGTACTTGAAGAGGTGCTGCGAGAATCTAACAGGGGAGAACAGAAGGCTGCAGAAGGAGGTGCAGGAGTTGAGAGCGCTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCTACCACCCTCACCATGTGTCCTCAGTGTGAGCGTGTGGCAGTTTCCTCATCTTCTTCCACCACCTGCCATCCAGCAGCGGCTGCTGGTGTACAGCGTCCCTCCATGCCCATCAACCCATGGGCGGCGGTGTTGCCGATTGAACGTTGA 849 53.47 MGGRDDELRLTLSLGLGVTTRPSFQPTHIHRPSNSMHNHIRNGSWKELFQFSDRNADSRSFLRGIDVNRLPTVVDGEEEYGVSSPNSTVSSISGKRSEREAEAEAEAEAEASRASCSQGSDNEDGGGGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTGENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTTCHPAAAAGVQRPSMPINPWAAVLPIER 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13608181 13610416 - Cp4.1LG03g15670.1 Cpe03g01822 467539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01822 282 MobiDBLite consensus disorder prediction 77 133 - -
Cpe03g01822 282 PANTHER - 5 277 - -
Cpe03g01822 282 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Cpe03g01822 282 Gene3D - 126 193 - -
Cpe03g01822 282 SUPERFAMILY Homeodomain-like 116 189 IPR009057 -
Cpe03g01822 282 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Cpe03g01822 282 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Cpe03g01822 282 Pfam HD-ZIP protein N terminus 1 100 IPR006712 GO:0005634
Cpe03g01822 282 SMART HOX_1 130 192 IPR001356 GO:0003677
Cpe03g01822 282 MobiDBLite consensus disorder prediction 95 109 - -
Cpe03g01822 282 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Cpe03g01822 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 5 277 - -
Cpe03g01822 282 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Cpe03g01822 282 CDD homeodomain 132 189 IPR001356 GO:0003677
Cpe03g01822 282 Coils Coil 201 221 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01822 Cpe12g00050 CCT
Cpe03g01822 Cpe08g00624 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01822 Cpe-Chr3:13608181 Cpe14g00930 Cpe-Chr14:7818059 6.47E-103 dispersed
Cpe03g01822 Cpe-Chr3:13608181 Cpe08g00624 Cpe-Chr8:4126877 2.79E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49295 PF04618 HD-ZIP_N 3.20E-28 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01822 K09338 - csv:101222132 427.557