Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01834 ATGCCCCGTTTCCACCATTATTATTATTATTATTATTATTATTGTTCTCTTCTCTTTCCCGCCCTTCTTTCCCTTTCACTTACCCCTTGCTTTTGCTTCCATCCCAAATCCTTCAATGTCTCCATGTACCAATCCTATGATCCCGATTGGTCTCCGGCCATCGCCACCTGGTACGGTACCCCCAATGGTGCCGGGAGCGATGGGGGTTCCTGTGGGTATGGAAGAGCGGTCGAGGAACCACCATTTTCGTCGTTAATTGCCGCGGGTGGCCCTTCTTTGTACAAATCCGGCAAAGCCTGTGGAGCTTGTTATCAGGTGAAGTGCTCCGGAGAAGGCGCATGTTCAGGGAGTCCGGTGACGGTGGTTATAACTGATAGTTGTCCGGGCGGCTCCTGTGCTTCCGACTCTGTCCACTTCGACCTCAGTGGCACTGCTTTTGGTGCTATGGCTGCTACTGGGCGGGCCGATGAACTCCGCAGTCTCGGCGTTTTGCACATTCAACATAAGAGGGTGGAATGCAATTACCCGGGAACCTCGATCAACTTCATCGTGGACTCAGGGTCGAACCCAGACTACTTCGCAGTTCTGATCGAATACGAAGATGGAGATGGAGAGCTAGGTTTAGTGGAGCTGAAACCGGCGCTCAACTCGTACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTCTGCCTCTGCGCTTCAACCTCCCTTCTCCCTCAGGCTCACTGCCCTCGACTCCGGCAAGACCGTGGTGGCTAACAACGTAATTCCGGTCAGGTGGCAGCCCGGACAGACTTATAGATCAGTGGTCAACTTCGATACATAA 843 52.55 MPRFHHYYYYYYYYCSLLFPALLSLSLTPCFCFHPKSFNVSMYQSYDPDWSPAIATWYGTPNGAGSDGGSCGYGRAVEEPPFSSLIAAGGPSLYKSGKACGACYQVKCSGEGACSGSPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGRADELRSLGVLHIQHKRVECNYPGTSINFIVDSGSNPDYFAVLIEYEDGDGELGLVELKPALNSYSWIPMKQSWGAVWKLDSASALQPPFSLRLTALDSGKTVVANNVIPVRWQPGQTYRSVVNFDT 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13675469 13676660 + Cp4.1LG03g15750.1 Cpe03g01834 467551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01834 280 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Cpe03g01834 280 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Cpe03g01834 280 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Cpe03g01834 280 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Cpe03g01834 280 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Cpe03g01834 280 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Cpe03g01834 280 Gene3D - 175 278 IPR036749 -
Cpe03g01834 280 Gene3D - 36 174 IPR036908 -
Cpe03g01834 280 PRINTS Major pollen allergen Lol pI signature 88 99 IPR005795 GO:0005576|GO:0019953
Cpe03g01834 280 PRINTS Major pollen allergen Lol pI signature 128 143 IPR005795 GO:0005576|GO:0019953
Cpe03g01834 280 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Cpe03g01834 280 PRINTS Major pollen allergen Lol pI signature 182 197 IPR005795 GO:0005576|GO:0019953
Cpe03g01834 280 PRINTS Major pollen allergen Lol pI signature 198 213 IPR005795 GO:0005576|GO:0019953
Cpe03g01834 280 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Cpe03g01834 280 SMART dpbb_1 86 168 IPR007112 -
Cpe03g01834 280 Pfam Lytic transglycolase 87 163 IPR009009 -
Cpe03g01834 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 191 274 IPR007117 -
Cpe03g01834 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 178 IPR007112 -
Cpe03g01834 280 PANTHER EXPANSIN-B2-RELATED 21 279 - -
Cpe03g01834 280 Pfam Expansin C-terminal domain 180 263 IPR007117 -
Cpe03g01834 280 SUPERFAMILY Barwin-like endoglucanases 49 198 IPR036908 -
Cpe03g01834 280 PANTHER EXPANSIN-B3 21 279 - -
Cpe03g01834 280 SUPERFAMILY PHL pollen allergen 179 274 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01834 Cpe08g00642 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01834 Cpe-Chr3:13675469 Cpe04g00772 Cpe-Chr4:7401232 7.14E-74 dispersed
Cpe15g00629 Cpe-Chr15:7008098 Cpe03g01834 Cpe-Chr3:13675469 7.45E-21 dispersed
Cpe03g01834 Cpe-Chr3:13675469 Cpe08g00642 Cpe-Chr8:4293389 4.97E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01834 - - csv:101219528 460.685